View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17289_low_4 (Length: 456)
Name: NF17289_low_4
Description: NF17289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17289_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 197 - 307
Target Start/End: Complemental strand, 38876595 - 38876486
Alignment:
| Q |
197 |
ttattgattaaacttgacattttgattgaataa--tgacttatacaatagtccgggtcccactccaaaagatcagaccaaatatcatcaattcagctgtt |
294 |
Q |
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| T |
38876595 |
ttattgattaaacttgacattttgattgaataaaatgacttatacaatagtccgggtcccactccaaaagatcagaccaaat---atcaattcagctgtt |
38876499 |
T |
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| Q |
295 |
tctccttagttcc |
307 |
Q |
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| T |
38876498 |
tctccttagttcc |
38876486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 366 - 422
Target Start/End: Complemental strand, 38876453 - 38876397
Alignment:
| Q |
366 |
tcaaatgttgttctcaagcttccaaatttatcacataacactgtctctgtctctgtc |
422 |
Q |
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| T |
38876453 |
tcaaatgttgttctcaagcttccaaatttatcacataacactgtctctgtctctgtc |
38876397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 38876628 - 38876592
Alignment:
| Q |
55 |
aatattataatcacgctaataactctctttcaattat |
91 |
Q |
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| T |
38876628 |
aatattataatcacgctaataactctctttcaattat |
38876592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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