View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17289_low_5 (Length: 419)

Name: NF17289_low_5
Description: NF17289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17289_low_5
NF17289_low_5
[»] chr6 (18 HSPs)
chr6 (20-417)||(23283233-23283630)
chr6 (20-201)||(23289762-23289943)
chr6 (240-417)||(23289576-23289750)
chr6 (20-189)||(23391243-23391412)
chr6 (32-201)||(23251800-23251969)
chr6 (20-192)||(23257785-23257957)
chr6 (259-417)||(23257596-23257760)
chr6 (20-189)||(23247400-23247569)
chr6 (261-417)||(23247211-23247370)
chr6 (20-177)||(23586942-23587099)
chr6 (261-417)||(23251623-23251782)
chr6 (20-201)||(23266331-23266512)
chr6 (30-200)||(23506611-23506781)
chr6 (259-417)||(23266157-23266315)
chr6 (40-177)||(23583059-23583196)
chr6 (30-188)||(23633965-23634123)
chr6 (284-354)||(23593016-23593086)
chr6 (322-382)||(23633810-23633870)


Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 20 - 417
Target Start/End: Complemental strand, 23283630 - 23283233
Alignment:
Q  20 gttgcagccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23283630 gttgcagccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattc 23283531  T
Q  120 aaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattgacaccgttgtggctgtcgtcatcacagaagaact 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23283530 aaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattgacaccgttgtggctgtcgtcgtcacagaagaact 23283431  T
Q  220 tagtttattttgtgttgaattggaagaagaggaggaagtgttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagaaatg 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23283430 tagtttattttgtgttgaattggaagaagaggaggaagtgttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagagatg 23283331  T
Q  320 tggaggaatatggcgttaatgtcccctacacatagtatggagcatgagtatgaaaattttgatttacaagactttcaagatgaagaggtatccctatg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23283330 tggaggaatatggcgttaatgtcccctacacatagtatggagcatgagtatgaaaattttgatttacaagactttcaagatgaagaggtatccctatg 23283233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 23289943 - 23289762
Alignment:
Q  20 gttgcagccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattc 119  Q
    |||||||| || ||||| ||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  23289943 gttgcagcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaagcttcctattcctgcctccgctgaagcaaaagacattc 23289844  T
Q  120 aaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattgacaccgttgtggctgt 201  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||  | ||||||||| |||||||||||    
T  23289843 aaagggcagctggagaagccgctgaggctttcagaccagacaagactttaatgactactggcattgacacggttgtggctgt 23289762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 240 - 417
Target Start/End: Complemental strand, 23289750 - 23289576
Alignment:
Q  240 tggaagaagaggaggaagtgttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagaaatgtggaggaatatggcgttaat 339  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  ||||||  ||||||||  ||||    
T  23289750 tggaagaagaggaagaagtgttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgcaagagttgtggaaaaatatggcactaat 23289651  T
Q  340 gtcccctacacatagtatggagcatgagtatgaaaattttgatttacaagactttcaagatgaagaggtatccctatg 417  Q
    |||||||||||||||| | ||||||||||||||| |||||||| |||||   |||||||||||||||||||| |||||    
T  23289650 gtcccctacacatagttttgagcatgagtatgaagattttgatgtacaa---tttcaagatgaagaggtatcgctatg 23289576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 23391412 - 23391243
Alignment:
Q  20 gttgcagccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattc 119  Q
    ||||| || |||||||| ||||||||||| ||||||||||||||||||||||| | |||| |||| ||||| |||||| || || | |||||||| || |    
T  23391412 gttgccgcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatac 23391313  T
Q  120 aaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattgacac 189  Q
    ||| ||| |||||| | ||||| ||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  23391312 aaaaggcggctgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgacac 23391243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 201
Target Start/End: Complemental strand, 23251969 - 23251800
Alignment:
Q  32 gcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattcaaagggcagctg 131  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| ||  |  | |    |||||| ||||||| |||||||     
T  23251969 gcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcgccttcctattccagcaacttccgcgataaaagatattcaaaaggcagcta 23251870  T
Q  132 cagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattgacaccgttgtggctgt 201  Q
    || |||||||||| ||||| ||||||||||| ||||||||||| |  ||||||||||||||||| |||||    
T  23251869 caaaagccgccgaagcttttagaccagacaatactttaatgaccagtgacattgacaccgttgtagctgt 23251800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 23257957 - 23257785
Alignment:
Q  20 gttgcagccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattc 119  Q
    ||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| ||  |  | |    |||||| ||||    
T  23257957 gttgccgcaatggcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcgccttcctattccagcaacttccgcgataaaagatattc 23257858  T
Q  120 aaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattgacaccgt 192  Q
    ||| ||| ||||| ||||| ||||| ||||| |||||||||||||||||||||| ||| || |||||||||||    
T  23257857 aaaaggcggctgctgaagctgccgaagcttttagaccagacaagactttaatgattaatgatattgacaccgt 23257785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 259 - 417
Target Start/End: Complemental strand, 23257760 - 23257596
Alignment:
Q  259 gttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagaaatgtggaggaatatggcgttaatgtcccctacacatagtatg 358  Q
    |||||||||||||||||||||||||||| ||||  ||||| ||||||||||| ||||| ||| ||||||||||||  |||||||||||||||||||  |     
T  23257760 gttgaatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacacatagcttt 23257661  T
Q  359 gag---catg---agtatgaaaattttgatttacaagactttcaagatgaagaggtatccctatg 417  Q
    |||   ||||   |||||||| || || || ||||||||||||||||||| |||||||| |||||    
T  23257660 gagtatcatgatcagtatgaagatattcatgtacaagactttcaagatgatgaggtatcactatg 23257596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 23247569 - 23247400
Alignment:
Q  20 gttgcagccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattc 119  Q
    ||||| || |||||||| ||||||||||||||||||||||| ||  |||||||||||||| | ||||||||||| ||  |  | | |  |||||| ||||    
T  23247569 gttgctgcaatggcattgaggggccgctatgcctgtctcaatttctcagactcggtgtggcgccttcctattccagcaacttccgcaataaaagatattc 23247470  T
Q  120 aaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattgacac 189  Q
    ||| ||||||| || |||| ||||| ||||| ||||||||||| ||||||||||||||| | ||||||||    
T  23247469 aaaaggcagctacaaaagcggccgaagcttttagaccagacaatactttaatgactaacaatattgacac 23247400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 261 - 417
Target Start/End: Complemental strand, 23247370 - 23247211
Alignment:
Q  261 tgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagaaatgtggaggaatatggcgttaatgtcccctacacatagtatgga 360  Q
    |||||||||||||||||||||| ||  || | |||||| ||||||||||| ||||  ||||||||||||||||||| ||||| |||||||||||  | ||    
T  23247370 tgaatatgttttgtgtggaagttgatgaacaggaggaaatgttgaatatgccagagttgtggaggaatatggcgttgatgtcacctacacatagctttga 23247271  T
Q  361 g---catgagtatgaaaattttgatttacaagactttcaagatgaagaggtatccctatg 417  Q
    |   |||||||||||  || || || ||||||| ||||||||||| |||||||| |||||    
T  23247270 gtatcatgagtatgacgatattcatgtacaagattttcaagatgatgaggtatcactatg 23247211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 23587099 - 23586942
Alignment:
Q  20 gttgcagccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattc 119  Q
    ||||| || |||||||| ||||||||||| || |||||||||||||||||||| | |||| |||| || |  |||||  |  || ||||||| || || |    
T  23587099 gttgctgcaatggcattgaggggccgctacgcttgtctcaactttgcagactcagcgtggcggctccccaaacctgcaactactcaagcaaaggatatac 23587000  T
Q  120 aaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaa 177  Q
    ||| ||| ||| |||| ||||||||||||||||||||||||||||||||| |||||||    
T  23586999 aaaaggctgctacagaggccgccgaggctttcagaccagacaagactttattgactaa 23586942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 261 - 417
Target Start/End: Complemental strand, 23251782 - 23251623
Alignment:
Q  261 tgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagaaatgtggaggaatatggcgttaatgtcccctacacatag-tatgg 359  Q
    ||||||||||| |||| |||||||||   ||||||||||||||||||||| ||||  ||||||||||||||||  ||||||||||||||||||| | |||    
T  23251782 tgaatatgtttcgtgttgaagtcgaa---gaagaggaagtgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgg 23251686  T
Q  360 --agcatg---agtatgaaaattttgatttacaagactttcaagatgaagaggtatccctatg 417  Q
      | ||||   |||||||| || || || ||||||||||||||||||| |||||||| |||||    
T  23251685 gtatcatgatcagtatgaagatattcatatacaagactttcaagatgatgaggtatcactatg 23251623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 23266512 - 23266331
Alignment:
Q  20 gttgcagccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattc 119  Q
    ||||| || |||||||| ||||| ||||| ||||||||||| |||||||| ||||||||| ||||||||||||| ||  |  |   |  |||||| ||||    
T  23266512 gttgctgcgatggcattgaggggtcgctacgcctgtctcaattttgcagattcggtgtggcggcttcctattccagcaacttcctcaataaaagatattc 23266413  T
Q  120 aaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattgacaccgttgtggctgt 201  Q
    ||| ||||||| || |||||||||| ||||| ||||||||||| ||| |||||| || | ||||||| || ||||| |||||    
T  23266412 aaaaggcagctacaaaagccgccgaagcttttagaccagacaatactataatgattaccaacattgagactgttgtagctgt 23266331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 23506781 - 23506611
Alignment:
Q  30 tggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattcaaagggcagc 129  Q
    |||||||||| || ||| | |||||||||||||||||||||||||  | | ||||||||||||||||| |    ||  ||| ||| || ||||  || ||    
T  23506781 tggcattaagaggtcgcaacgcctgtctcaactttgcagactcggcctcgcggcttcctattcctgccactaaagagacaagagatatacaaaacgcggc 23506682  T
Q  130 tgcagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattgacaccgttgtggctg 200  Q
    |||||||||  | |||||||||||||||||||||||||||| |||||| |||| ||| |||| ||| ||||    
T  23506681 tgcagaagctactgaggctttcagaccagacaagactttaacgactaatgacaatgaaaccgctgtagctg 23506611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 417
Target Start/End: Complemental strand, 23266315 - 23266157
Alignment:
Q  259 gttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagaaatgtggaggaatatggcgttaatgtcccctacacatagtatg 358  Q
    |||||||||||||||||||||||      ||||||||||| ||||||||||| | ||  | ||||||||||||||  |||||||||||||||||||  |     
T  23266315 gttgaatatgttttgtgtggaag------aagaagaggaaatgttgaatatgccggagttttggaggaatatggcactaatgtcccctacacatagcttt 23266222  T
Q  359 gag---catg---agtatgaaaattttgatttacaagactttcaagatgaagaggtatccctatg 417  Q
    |||   ||||   | |||||| ||||| |||| ||||||||||||||||| |||||||| |||||    
T  23266221 gagtatcatgatcaatatgaagattttcattttcaagactttcaagatgatgaggtatcactatg 23266157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 177
Target Start/End: Complemental strand, 23583196 - 23583059
Alignment:
Q  40 gggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattcaaagggcagctgcagaagcc 139  Q
    ||||||||| ||||||||||||||||||||||| |  ||| |||| || |  |||||  |  || | ||||| || || |||| ||| |||||||| |||    
T  23583196 gggccgctacgcctgtctcaactttgcagactcagcatggcggctccccaaacctgcaactactcaggcaaaggatatacaaaaggctgctgcagaggcc 23583097  T
Q  140 gccgaggctttcagaccagacaagactttaatgactaa 177  Q
    ||| |||||||||||||||||||||||||| |||||||    
T  23583096 gccaaggctttcagaccagacaagactttattgactaa 23583059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 188
Target Start/End: Complemental strand, 23634123 - 23633965
Alignment:
Q  30 tggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattcaaagggcagc 129  Q
    |||||||||| || ||| | |||||||| || ||||| ||||| |  | | ||||||||||||||||| |  | ||  ||| ||| || |||| | | ||    
T  23634123 tggcattaagaggtcgcaacgcctgtcttaattttgctgactctgcctcgcggcttcctattcctgccactacagagacaagagatatacaaaagacggc 23634024  T
Q  130 tgcagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattgaca 188  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||| | |||| |||||    
T  23634023 tgcagaagctgccgaggctttcagaccagacaagactttaacgactgatgacaatgaca 23633965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 354
Target Start/End: Complemental strand, 23593086 - 23593016
Alignment:
Q  284 gaaaaagaagaggaagtgttgaatatgtcagaaatgtggaggaatatggcgttaatgtcccctacacatag 354  Q
    |||||||| |||||||||||||| ||  ||||   || ||||||||||||  |||||||||||||||||||    
T  23593086 gaaaaagaggaggaagtgttgaacattccagagtcgttgaggaatatggctctaatgtcccctacacatag 23593016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 23633870 - 23633810
Alignment:
Q  322 gaggaatatggcgttaatgtcccctacacatagtatggagcatgagtatgaaaattttgat 382  Q
    ||||||||||||  |||||||||||||||||||  ||| |||||||| |||| || |||||    
T  23633870 gaggaatatggctctaatgtcccctacacatagcttggggcatgagtttgaacatattgat 23633810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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