View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17289_low_6 (Length: 412)
Name: NF17289_low_6
Description: NF17289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17289_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 14 - 394
Target Start/End: Original strand, 33330266 - 33330649
Alignment:
| Q |
14 |
agattttaaaggtagagatgtatttaagatgaaaat--gagagctaaaagttatgctctaaatcagccaataaaaaaggcgctagctgccagaaacttcc |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33330266 |
agatgttaaaggtagagatgtatttaagatgaaaatatgagagctaaaagttatgctctaaatcagccaataaaaaaggcgctagctgccagaaacttcc |
33330365 |
T |
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| Q |
112 |
gaatattttgatgatgacatagagg-atgttccaattagaataagcaataagatcttggtgaaagagttcaaagctgatgatcaaggggtcgatgtgtta |
210 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33330366 |
gaatattttgatgatgacatagagggatgttccaattagaataagcaataagatcttggtgaaagagttcaaagctgatgatcaaggggtcgatgtgtta |
33330465 |
T |
|
| Q |
211 |
acaaaggctttaccaaaagcaagatttgaaatattaaaaaacaagtcgggactttgaagaaagtaaggcaaggagctttgtagaaactgccttagtattt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33330466 |
acaaaggctttaccaaaagcaagatttgaaatattaaaaaacaagtcgggactttgaagaaagtaaggcaaggagctttgtagaaactgccttagtattt |
33330565 |
T |
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| Q |
311 |
tcagttatgatattaataagttttggaagagccattggtgagttgtttttcagttataattcattttaaaggcaatagtttaca |
394 |
Q |
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| T |
33330566 |
tcagttatgatattaataagttttgtaagagccattagtgagttgtttttcagttatgattcattttaaaggcaatagtttaca |
33330649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 149 - 367
Target Start/End: Original strand, 13457524 - 13457754
Alignment:
| Q |
149 |
gaataagcaataagatcttggtgaaagagttcaaagctgatgatcaaggggtcgatgtgttaacaaaggctttaccaaaagcaagatttgaaatattaaa |
248 |
Q |
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| T |
13457524 |
gaataagcaatgagatcttgatgaaagagttcaaagttgatgatcaaggggttgatgtgttaacaaaggctttaccaaaagcaagatttgatatattgaa |
13457623 |
T |
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| Q |
249 |
aaacaagtcgggactttgaagaaagtaaggca---aggagctttgtagaaactg----------ccttagtattttcagttatgatattaataagttttg |
335 |
Q |
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| T |
13457624 |
agacaagctgggactttgcagcaactaaggcacggaggagatttgtagaaattgacttagtattccttagtattttcagttatgatattattaagtttt- |
13457722 |
T |
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| Q |
336 |
gaagagccattggtgagttgtttttcagttat |
367 |
Q |
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| T |
13457723 |
ttatagacattagtgagttgtttttcagttat |
13457754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 17532548 - 17532610
Alignment:
| Q |
298 |
tgccttagtattttcagttatgatattaataagttttggaagagccattggtgagttgttttt |
360 |
Q |
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| T |
17532548 |
tgccttagtattttcagttatgatattaataagttttttatgagacattagtgagttgttttt |
17532610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 27175519 - 27175680
Alignment:
| Q |
19 |
ttaaaggtagagatgtatttaagatgaaaatgagagctaaaagttatgctctaaatcagccaataaaaaaggcgctagctgccagaaacttccgaatatt |
118 |
Q |
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||||||| |||||||||||||| || |||| ||||||||| ||||||||||||||||||||||||| ||| | | |||| ||||||| ||||||| |
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| T |
27175519 |
ttaaaggcagagatgtatttaaaattaaaacaagagctaaatgttatgctctaaatcagccaataaaggaggtgat----gccataaacttctgaatatt |
27175614 |
T |
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| Q |
119 |
ttgatgatgacatagaggatgttccaattagaataagcaataagatcttggtgaaagagttcaaag |
184 |
Q |
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| T |
27175615 |
ttgatgatgacatagaggatgttccaattagaagaagcaataagattttggtgaaagagttcaaag |
27175680 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 188 - 384
Target Start/End: Original strand, 32149694 - 32149894
Alignment:
| Q |
188 |
atgatcaaggggtcgatgtgttaacaaaggctttaccaaaagcaagatttgaaatattaaaaaacaagtcgggactttgaagaaagtaaggca---agga |
284 |
Q |
| |
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||||||||| ||| | ||||||||||||||||||| |||||| |||||||||||||||||| |||| ||| || || || || ||||||| |||| |
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| T |
32149694 |
atgatcaagcggttgctgtgttaacaaaggctttaataaaagcgagatttgaaatattaaaagacaatctgggtctctgcagcaactaaggcaaggagga |
32149793 |
T |
|
| Q |
285 |
gctttgtagaaactgccttagtattttcagttatgatattaataag-ttttggaagagccattggtgagttgtttttcagttataattcattttaaaggc |
383 |
Q |
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| T |
32149794 |
gatttgtagaaattgccttagtattttcatttatgatattaacaagtttttttaagagacattagttagttatttttcagttatgattagttttcaaggc |
32149893 |
T |
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| Q |
384 |
a |
384 |
Q |
| |
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| |
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|
| T |
32149894 |
a |
32149894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 360
Target Start/End: Complemental strand, 14806165 - 14806103
Alignment:
| Q |
298 |
tgccttagtattttcagttatgatattaataagttttggaagagccattggtgagttgttttt |
360 |
Q |
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||||||||||||||||||||||||| ||||||||||| | ||| |||| ||||||||||||| |
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| T |
14806165 |
tgccttagtattttcagttatgatactaataagttttttatgagacattagtgagttgttttt |
14806103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 360
Target Start/End: Complemental strand, 15253159 - 15253097
Alignment:
| Q |
298 |
tgccttagtattttcagttatgatattaataagttttggaagagccattggtgagttgttttt |
360 |
Q |
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||||||||||||||||||||||||| ||||||||||| | ||| |||| ||||||||||||| |
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| T |
15253159 |
tgccttagtattttcagttatgatactaataagttttttatgagacattagtgagttgttttt |
15253097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 367
Target Start/End: Original strand, 2599552 - 2599632
Alignment:
| Q |
286 |
ctttgtagaaactgccttagtattttcagttatgatattaataagttttggaagagccattggtgagttgtttttcagttat |
367 |
Q |
| |
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|||||| |||| |||| ||||||||||||||||||||||| || ||||| ||||| |||| ||| ||| |||||||||||| |
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| T |
2599552 |
ctttgttgaaattgccgtagtattttcagttatgatattattatgtttt-taagagacattagtgtgttatttttcagttat |
2599632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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