View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17289_low_8 (Length: 297)
Name: NF17289_low_8
Description: NF17289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17289_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 15964546 - 15964275
Alignment:
| Q |
17 |
tattccactttcaaatgtggttcccttaagagcaggaaacatggttttgattggcataggaccttgaagtaatctggcttttgctaatgaatttggagta |
116 |
Q |
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| T |
15964546 |
tattccactttcaaatgtggttcccttaagagcaggaaacatggttttgattggcataggaccttgaagtaatctggcttttgctaatgaatttggagtg |
15964447 |
T |
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| Q |
117 |
tagcttgttttcgcgcattgatcgccggagaagaagaatgcaacattgtctccagtgtcaaatgaacaatctattttatatttaaagattgtattggcaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15964446 |
tagcttgttttcgcgcattgatcgccggagaagaagaatgcaacattgtctccagtgtcaaatgaacaatctattttatatttaaagattgtattagcaa |
15964347 |
T |
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| Q |
217 |
acattggaaacccattagcaatatttgatggaccactgattatatctttctttttacctccaggagtataat |
288 |
Q |
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| T |
15964346 |
acattggaaacccaccagcaatatttgttggagcactgattatatctttcttttgacctccaggagcataat |
15964275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 17735357 - 17735628
Alignment:
| Q |
17 |
tattccactttcaaatgtggttcccttaagagcaggaaacatggttttgattggcataggaccttgaagtaatctggcttttgctaatgaatttggagta |
116 |
Q |
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||||||| ||||||| |||||||||| || ||||||||| | ||||||| ||||||||| ||||| ||||||||||||| ||| | ||||||| |
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| T |
17735357 |
tattccatcttcaaatatggttcccttgaggcaaggaaacattttaatgattggactaggaccttcaagtattctggcttttgctggtgagtgtggagta |
17735456 |
T |
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| Q |
117 |
tagcttgttttcgcgcattgatcgccggagaagaagaatgcaacattgtctccagtgtcaaatgaacaatctattttatatttaaagattgtattggcaa |
216 |
Q |
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| T |
17735457 |
tacgctgtttttgcacattgatctccagcaaagaagtatgtcacattgtttccgatgtcaaatgaacaatctatttgatattgaaataaggttcgtgcaa |
17735556 |
T |
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| Q |
217 |
acattggaaacccattagcaatatttgatggaccactgattatatctttctttttacctccaggagtataat |
288 |
Q |
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| T |
17735557 |
acattggaaacccatcagcaatacttgttggaccactaattatatctttctttttgcctccaggagcataat |
17735628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 17726647 - 17726831
Alignment:
| Q |
17 |
tattccactttcaaatgtggttcccttaagagcaggaaacatggttttgattggcataggaccttgaagtaatctggcttttgctaatga---atttgga |
113 |
Q |
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||||||| |||||||| ||||||||| ||| |||||||||| |||||||| ||||| |||||||||| |||||||||||| ||| || |||| |
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| T |
17726647 |
tattccattttcaaatatggttccctcgagacaaggaaacatgaccttgattggagtaggagcttgaagtaacctggcttttgctgatggtgcatctgga |
17726746 |
T |
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| Q |
114 |
gtatagcttgttttcgcgcattgatcgccggagaagaagaatgcaacattgtctccagtgtcaaatgaacaatctattttatatt |
198 |
Q |
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| T |
17726747 |
gagtagtttgtttttacacattgatctctagagaagaagaatgctacattgtctccagtgtcaaaggaactacctatttgatatt |
17726831 |
T |
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