View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1728_high_5 (Length: 275)
Name: NF1728_high_5
Description: NF1728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1728_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 45037938 - 45037850
Alignment:
| Q |
177 |
gctgaaatatagcaccaaccatttcccctggtcttgnnnnnnnttctagaacggttgcacctaaacttttttactcacttccagaataat |
266 |
Q |
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| T |
45037938 |
gctgaaatatagcaccaaccatttccccttgtcttgaaaaaaattcttgaacggttgcacctaaac-tttttactcacttccataataat |
45037850 |
T |
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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 45038097 - 45038014
Alignment:
| Q |
18 |
cttgatatatattacaaaaaccaacaacagaatcnnnnnnnnnnnncaagaacataatgtacatatttgaaaattacaagccag |
101 |
Q |
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| T |
45038097 |
cttgatatatattacaaaaaccaacaacagaatcaaaaataaaaaacaagaacataatgtacatatttgaaaattacaagccag |
45038014 |
T |
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