View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1728_low_1 (Length: 814)

Name: NF1728_low_1
Description: NF1728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1728_low_1
NF1728_low_1
[»] chr8 (1 HSPs)
chr8 (1-758)||(930657-931413)


Alignment Details
Target: chr8 (Bit Score: 652; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 1 - 758
Target Start/End: Complemental strand, 931413 - 930657
Alignment:
Q  1 accgaaatctaacaccatcaaagctttgccagaatttttgcactcagtgatattaacttctacatccttatctcccttacacagaggagtttgttcaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  931413 accgaaatctaacaccatcaaagctttgccagaatttttgcactcagtgatattaacttctacatccttatctcccttacacagaggagtttgttcaatt 931314  T
Q  101 gacatcatttcccggacacaatcatcagcctcaccgttttccataggctcaagaacatttagttccgaaaatgcaggggcgtttatattctccaattggc 200  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  931313 gacatcatttcccgggcacaatcatcagcctcaccgttttccctaggctcaagaacatttagttccgaaaatgcaggggcgtttatattctccaattggc 931214  T
Q  201 tctttatctccaagtcaggggacattttcacaaatcatgcaaaccttcactgctcagaaatcatgcaaaaaccacaatatcatcatgaaaaacatgagtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  931213 tctttatctccaagtcaggggacattttcacaaatcatgcaaaccttcactgctcagaaatcatgcaaaaaccacaatatcatcatgaaaaacatgagtc 931114  T
Q  301 acaggttgacgaaagnnnnnnntagatgcataataaaccaagactacagaacaaattgcaaaacgtcaccttgatccaannnnnnnactattataaagga 400  Q
    |||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  931113 acaggttgaccaaagaaaaaaatagatgcataataaaccaagactacagaacaaattgcaaaacgtcaccttgatccaatctttttactattataaagga 931014  T
Q  401 gaatacataactaaaactactacattcttcataataatggtaaacacattcatatcttgaagggctgtctggtcactcatgagtcatgacctaccaattt 500  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  931013 aaatacataactaaaactactacattcttcataataatggtaaacacattcatatcttgaagggctgtctggtcactcatgagtcatgacctaacaattt 930914  T
Q  501 atcgaacacgataaccattggcataacacaatttttgatacatcatgagatacgtaaaacatctcatttaaagttcttggattaccgctcaattatgaca 600  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  930913 atcgaacacgataaccactggcataacacaatttttgatacatcatgagatacgtaaaacatctcatttaaagttcttgaattaccgctcaattatgaca 930814  T
Q  601 taagagacagttttcgttgatgtatgatcatggtattcagtggagttatgtaatcaacaattccaaaactgacgaaccttcatcctctcaaaattatcgc 700  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |    
T  930813 taagaaacagttttcattgatgtatgatcatggtattcagtggagttatgtaatcaacaattccaaaactgacgaaccttcctccactcaaaattatc-c 930715  T
Q  701 tttttcttcttcttttcatagagttcaatatcctcaaagcaggtgcatcaatacacac 758  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  930714 ttttttttcttcttttcatatagttcaatatcctcaaatcaggtgcatcaatacacac 930657  T

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