View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1728_low_3 (Length: 341)
Name: NF1728_low_3
Description: NF1728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1728_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 13 - 341
Target Start/End: Complemental strand, 2624625 - 2624297
Alignment:
| Q |
13 |
aatataaaagatcacaattcaattgcgacaaatatctatatagaaaaaattgctacctgtgattctatcgtatacatcagccgcagattcaccatttgga |
112 |
Q |
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| T |
2624625 |
aatataaaagatcacaattcaattgcgacaaatatctatatagaaaaaattgctacctgtgattctatcgtatacatcagccgcagattcaccatttgga |
2624526 |
T |
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| Q |
113 |
aatcggtaaaagaaacgaccataaagatggcgttgcgctttttcaactttcatcaactctctattttgaaaattcccttacataacataaatcacaaaga |
212 |
Q |
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| T |
2624525 |
aatcggtaaaagaaacgaccataaagatggcgttgcgctttttcaactttcatcaactctctattttgaaaattcccttacataacataaatcacaaaga |
2624426 |
T |
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| Q |
213 |
aacaataaataaatttgagaacataccaatatacaagacagaaaactaaactaggtagaaaaacttttgaattagttaattaattattcaataccgaaat |
312 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624425 |
aacaataaataaatttgagaacatatcaatatacaagacagaaaactaaattaggtagaaaaacttttgaattagttaattaattattcaataccgaaat |
2624326 |
T |
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| Q |
313 |
cttgttctctaatccgaggctcttctctg |
341 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2624325 |
cttgttctctaatccgaggctcttctctg |
2624297 |
T |
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