View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1728_low_7 (Length: 269)
Name: NF1728_low_7
Description: NF1728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1728_low_7 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 32812539 - 32812271
Alignment:
| Q |
1 |
atggaggattcaatcttgaacgtatgtcaacagcatatagtatagttgatgacctgttaggatcatacagtccagataacgctttgcatctccatagatg |
100 |
Q |
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| T |
32812539 |
atggaggattcaatcttgaacgtatgtcaacagcatatagtatagttgatgacctgttaggatcatacggcccagataacgctttgcatctccatagatg |
32812440 |
T |
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| Q |
101 |
tgtggtgattacattaaaactagtgacacgggcaatactattaacttttgctttttccttcagtttgttgatatttttagaggttaattgaaaaacctta |
200 |
Q |
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| T |
32812439 |
tgtggtgattacattaaaactagtgacacgggcaatactattaatttttgctttttccttcagtttgttgatatttttagaggttaattgaaaaacctta |
32812340 |
T |
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| Q |
201 |
aagtcgagttcttctgaggatgcttcaaagacaccagattcattgcctaaaggtagtaggttataaagc |
269 |
Q |
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| T |
32812339 |
aagtcgagttcttctgaggatgcttcaaagacaccagattcattgcctaaaggtagtaggttatcaagc |
32812271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 32830069 - 32829814
Alignment:
| Q |
1 |
atggaggattcaatcttgaacgtatgtcaacagcatatagtatagttgatgacctgttaggatcatacagtccagataacgctttgcatctccatagatg |
100 |
Q |
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||||||||||||||||||||||||| ||||| ||||||| ||| | ||||| || ||||||||||| | ||| || ||||| |||||||||| ||| |
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| T |
32830069 |
atggaggattcaatcttgaacgtatatcaaccgcatataaaataatagatgatctattaggatcatatgatttagacaatgctttacatctccatatatg |
32829970 |
T |
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| Q |
101 |
tgtggtgattacattaaaactagtgacacgggcaatactattaacttttgctttttccttcagtttgttgatatttttagaggttaattgaaaaacctta |
200 |
Q |
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| T |
32829969 |
tgcggcgacaacattaaaactgatgacacgagaggtgttattaccttttgccttttccttaaggttgttgatgtcttcatatgtcagttgaaaaaccatg |
32829870 |
T |
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| Q |
201 |
aagtcgagttcttctgaggatgcttcaaagacaccagattcattgcctaaaggtag |
256 |
Q |
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| T |
32829869 |
aagtcaaattcttctgaggatgcttcaaagacaccagatttaatgcctaaaggtag |
32829814 |
T |
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