View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729-Insertion-11 (Length: 262)
Name: NF1729-Insertion-11
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729-Insertion-11 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 32627454 - 32627200
Alignment:
| Q |
8 |
gttgcatgattataacatttgtaggaagaaaaagcgacaatccaacaagcaaggagtgttgttacatttgggaacttttggctatggctcttaatgacat |
107 |
Q |
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| T |
32627454 |
gttgcatgattataacatttgtaggaagaaaaagcgacaatccaacaagcaaggagtgttgttacatttgggaacttttggctatggctcttaatgacat |
32627355 |
T |
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| Q |
108 |
ggtcttggaggtaaagtatgatgcatattttcttttattgatgggtcacgacccattcctactacattaggtcaacctaaacctgatgtggagcatttca |
207 |
Q |
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| T |
32627354 |
ggtcttggaggtaaagtatgatgcatattttcttttattgatgggtcacgacccattcctactacattaggtcaacctaaacctgatgtggagcatttca |
32627255 |
T |
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| Q |
208 |
aacattagtattgatctttgctcgtttgtaaatatttcaaatgttaatttgatga |
262 |
Q |
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| T |
32627254 |
aacattagtattgatctttgctcgtttgtaaatatttcaaatgttaatttgatga |
32627200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 32703579 - 32703483
Alignment:
| Q |
33 |
aagaaaaagcgacaatccaacaagcaaggagtgttgttacatttgggaacttttggctatggctcttaatgacatggtcttggaggtaaagtatgat |
129 |
Q |
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| T |
32703579 |
aagaaaaagcgaagatccatcaagcaaagagtgttgttacgtttgggaagttatggctatgggtcttaatgaaatggtcttgcaggtaaactatgat |
32703483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 32709032 - 32708921
Alignment:
| Q |
11 |
gcatgattataacatttgtaggaagaaaaagcgacaatccaacaagcaaggagtgttgttacatttgggaacttttggctatggctcttaatgacatggt |
110 |
Q |
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| T |
32709032 |
gcatgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaacttatggctatagctcttaatgatatggt |
32708933 |
T |
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| Q |
111 |
cttggaggtaaa |
122 |
Q |
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|||| ||||||| |
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| T |
32708932 |
cttgcaggtaaa |
32708921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 27736347 - 27736240
Alignment:
| Q |
13 |
atgattataacatttgtaggaagaaaaagcgacaatccaacaagcaaggagtgttgttacatttgggaacttttggctatggctcttaatgacatggtct |
112 |
Q |
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| T |
27736347 |
atgattctaacacttttaggaaggaaatgcgacaatccatcaagcaaggagtgttgttacatttgggaactcatggctatggcccttaatgatatggtct |
27736248 |
T |
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| Q |
113 |
tggaggta |
120 |
Q |
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| T |
27736247 |
tgcaggta |
27736240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 5811075 - 5810958
Alignment:
| Q |
12 |
catgattataacatttgtaggaagaaaaagcgacaatccaacaagcaaggagtgttgttacatttgggaacttttggctatggctcttaatgacatggtc |
111 |
Q |
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| T |
5811075 |
catgattctaacatttttaggacgaaaaaacagtgatccatcaagcaaggagtctggttacatttgggaactcatggctatggctcttaatgatatggtt |
5810976 |
T |
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| Q |
112 |
ttggaggtaaagtatgat |
129 |
Q |
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| T |
5810975 |
ttgcaggtagactatgat |
5810958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 20116698 - 20116800
Alignment:
| Q |
8 |
gttgcatgattataacatttgtaggaagaaaaagcgacaatccaacaagcaaggagtgttgttacatttgggaacttttggctatggctcttaatgacat |
107 |
Q |
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||||||||||| | |||||| |||||||| |||| || ||||| |||||| | | ||||||| |||||||||||||||||| ||||||||||| || |
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| T |
20116698 |
gttgcatgattctgacatttataggaagagaaagtgatgatccattaagcaatggggtttgttacctttgggaacttttggctacagctcttaatgatat |
20116797 |
T |
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| Q |
108 |
ggt |
110 |
Q |
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||| |
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| T |
20116798 |
ggt |
20116800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 110
Target Start/End: Complemental strand, 21943132 - 21943097
Alignment:
| Q |
75 |
ttgggaacttttggctatggctcttaatgacatggt |
110 |
Q |
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| T |
21943132 |
ttgggaacttttggctatggctcttaatgatatggt |
21943097 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 8030576 - 8030641
Alignment:
| Q |
55 |
agcaaggagtgttgttacatttgggaacttttggctatggctcttaatgacatggtcttggaggta |
120 |
Q |
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| T |
8030576 |
agcaaagagtgttgctatatttgggagcttcttgctgttgcccttaatgacatggtcttggaggta |
8030641 |
T |
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