View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729-Insertion-12 (Length: 446)
Name: NF1729-Insertion-12
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729-Insertion-12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 154 - 446
Target Start/End: Original strand, 44708949 - 44709241
Alignment:
| Q |
154 |
ttcaagaacaacttgatacataagcatataataagtttagccccctaaaaaccaaccggcaaacacatacaaaactcaaatctcttatcggttggaccaa |
253 |
Q |
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| T |
44708949 |
ttcaagaacaacttgatacataagcatataataagtttagccccctaaaaaccaaccggcaaacacatacaaaactcaaatcttttatcggttggaccaa |
44709048 |
T |
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| Q |
254 |
ttcatttttagtttcttatacaattcnnnnnnnncactcattgatgagatactaatggttacacttgcatcgaattttattaattgaaatattatccaac |
353 |
Q |
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| T |
44709049 |
tccatttttagtttcttatacaattctttttttttactcattgatgaaatactaatggttacacttgcatcgaattttattaattgaaatattatccaac |
44709148 |
T |
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| Q |
354 |
ccttatatttgtacttctttaattctcctgcatccattcaacatttcattgttttttctatctatcttgtcttatcatattatttatctatca |
446 |
Q |
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| T |
44709149 |
ccttatatttgtacttctttaattctcctgcatccattcaacatttcattgttttttctatctatcttatcttatcatattatttatctatca |
44709241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 44708782 - 44708896
Alignment:
| Q |
8 |
gtgggttcttccatcattgaattatttttatacgcaaaagttaaacatcaaatcacaaaccacttgcttaaaggtgtgtttgtgagttagattttagaca |
107 |
Q |
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| T |
44708782 |
gtgggttcttccatcattaaattatttttatacgcaaaagttaaagatcaaatcacaaaccacttgcttaaaggtgtgtttgtgagttagattttagaca |
44708881 |
T |
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| Q |
108 |
taaacgtttggaggg |
122 |
Q |
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| T |
44708882 |
taaacgtttggaggg |
44708896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 421
Target Start/End: Original strand, 41966692 - 41966728
Alignment:
| Q |
385 |
atccattcaacatttcattgttttttctatctatctt |
421 |
Q |
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| T |
41966692 |
atccattcaacatttcatttttttttctctctatctt |
41966728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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