View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1729-Insertion-13 (Length: 962)

Name: NF1729-Insertion-13
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1729-Insertion-13
NF1729-Insertion-13
[»] chr5 (14 HSPs)
chr5 (8-962)||(12595774-12596728)
chr5 (9-632)||(15801356-15801972)
chr5 (100-347)||(30416590-30416830)
chr5 (629-726)||(12243006-12243103)
chr5 (90-302)||(20837164-20837369)
chr5 (880-923)||(43215332-43215375)
chr5 (90-305)||(20810806-20811014)
chr5 (880-919)||(10363703-10363743)
chr5 (880-928)||(12460069-12460117)
chr5 (880-947)||(14295459-14295527)
chr5 (880-962)||(9202782-9202865)
chr5 (880-917)||(42583102-42583140)
chr5 (880-924)||(28586838-28586883)
chr5 (877-929)||(32969184-32969237)
[»] chr8 (21 HSPs)
chr8 (8-632)||(3313222-3313839)
chr8 (8-624)||(3362600-3363209)
chr8 (8-624)||(3392674-3393283)
chr8 (56-455)||(3408456-3408848)
chr8 (90-324)||(7165837-7166064)
chr8 (43-324)||(3326106-3326380)
chr8 (90-310)||(3287625-3287838)
chr8 (56-306)||(3268362-3268605)
chr8 (90-337)||(3263698-3263938)
chr8 (56-298)||(13807603-13807838)
chr8 (56-339)||(13786303-13786579)
chr8 (90-306)||(31174549-31174758)
chr8 (90-305)||(3399790-3399998)
chr8 (880-916)||(37353329-37353365)
chr8 (880-944)||(35374425-35374490)
chr8 (884-928)||(42237490-42237535)
chr8 (880-962)||(4558751-4558834)
chr8 (880-947)||(27049321-27049388)
chr8 (880-928)||(1112806-1112855)
chr8 (884-928)||(8909007-8909052)
chr8 (883-923)||(37444488-37444529)
[»] scaffold0468 (1 HSPs)
scaffold0468 (90-305)||(7426-7634)
[»] chr3 (19 HSPs)
chr3 (90-303)||(6907020-6907226)
chr3 (103-347)||(32412146-32412383)
chr3 (880-947)||(36783383-36783451)
chr3 (880-926)||(15304417-15304464)
chr3 (880-943)||(1395624-1395688)
chr3 (880-923)||(10101549-10101593)
chr3 (880-923)||(10212474-10212518)
chr3 (880-962)||(33405201-33405284)
chr3 (878-923)||(42808930-42808976)
chr3 (880-960)||(52618956-52619037)
chr3 (884-947)||(37689433-37689497)
chr3 (880-923)||(42809254-42809298)
chr3 (880-928)||(50952287-50952334)
chr3 (880-923)||(48597663-48597706)
chr3 (844-916)||(2128331-2128398)
chr3 (885-927)||(2321133-2321175)
chr3 (908-961)||(20874339-20874392)
chr3 (880-928)||(32095259-32095308)
chr3 (880-928)||(49586984-49587033)
[»] chr2 (11 HSPs)
chr2 (42-305)||(14768039-14768296)
chr2 (897-947)||(18066099-18066149)
chr2 (821-928)||(37474656-37474758)
chr2 (880-947)||(914034-914102)
chr2 (880-923)||(3673760-3673804)
chr2 (884-947)||(18962087-18962151)
chr2 (880-922)||(40837502-40837545)
chr2 (880-945)||(42592292-42592358)
chr2 (887-947)||(11513858-11513919)
chr2 (881-945)||(33256694-33256759)
chr2 (880-944)||(39567856-39567921)
[»] chr7 (7 HSPs)
chr7 (49-306)||(8372859-8373109)
chr7 (890-949)||(25296948-25297007)
chr7 (882-946)||(9527140-9527205)
chr7 (880-923)||(39591540-39591584)
chr7 (880-947)||(40689035-40689103)
chr7 (880-924)||(35266852-35266897)
chr7 (880-916)||(43152982-43153019)
[»] chr1 (14 HSPs)
chr1 (899-949)||(33723429-33723479)
chr1 (880-952)||(49517023-49517096)
chr1 (885-928)||(28389141-28389184)
chr1 (880-961)||(6074427-6074509)
chr1 (880-947)||(27738229-27738297)
chr1 (879-962)||(44032033-44032117)
chr1 (884-962)||(7273973-7274052)
chr1 (880-962)||(7472265-7472347)
chr1 (875-928)||(47877070-47877124)
chr1 (880-924)||(5756758-5756803)
chr1 (880-920)||(14737781-14737822)
chr1 (880-928)||(15360847-15360896)
chr1 (880-928)||(26630416-26630465)
chr1 (880-928)||(31517808-31517857)
[»] chr6 (8 HSPs)
chr6 (880-946)||(9093606-9093673)
chr6 (880-928)||(24836267-24836316)
chr6 (880-944)||(29274281-29274346)
chr6 (880-947)||(1402949-1403017)
chr6 (881-947)||(11340674-11340741)
chr6 (883-947)||(281897-281962)
chr6 (876-916)||(28621190-28621231)
chr6 (880-928)||(30537014-30537063)
[»] scaffold0024 (1 HSPs)
scaffold0024 (880-928)||(27529-27578)
[»] chr4 (14 HSPs)
chr4 (880-944)||(8130127-8130192)
chr4 (880-928)||(30024653-30024702)
chr4 (880-928)||(30338660-30338709)
chr4 (808-857)||(37636354-37636403)
chr4 (878-917)||(26520308-26520348)
chr4 (880-962)||(49219092-49219175)
chr4 (880-945)||(53626729-53626795)
chr4 (880-928)||(4071835-4071884)
chr4 (880-928)||(11389479-11389528)
chr4 (880-916)||(17884021-17884058)
chr4 (881-962)||(30207605-30207686)
chr4 (884-948)||(40174520-40174585)
chr4 (880-928)||(47119033-47119082)
chr4 (884-956)||(51630068-51630141)
[»] scaffold0549 (2 HSPs)
scaffold0549 (881-947)||(1773-1840)
scaffold0549 (881-947)||(3863-3930)
[»] scaffold0103 (1 HSPs)
scaffold0103 (884-928)||(51525-51570)


Alignment Details
Target: chr5 (Bit Score: 850; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 850; E-Value: 0
Query Start/End: Original strand, 8 - 962
Target Start/End: Complemental strand, 12596728 - 12595774
Alignment:
Q  8 aaattcttacggtatggtcggtcaatacatcaactacatcttcatggcaccacaatcgactacacttctcaggctcctcaggtgaactttcgcgaacaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12596728 aaattcttacggtatggtcggtcaatacatcaactacatcttcatggcaccacaatcgactacacttctcaggctcctcaggtgaactttcgcgaacaat 12596629  T
Q  108 ttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatcaggtatcagcactgttattcc 207  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12596628 ttctcttcccatgtcttgtagcaaagcattcattccaagcttgttattcttttcaacttttatgaggcttctctctatcaggtatcagcactgttattcc 12596529  T
Q  208 aatatccgcttgaagaccacaaccatttagtatctctgtaacataggcactatccttaccgataaagaaacaacaaatatcaagaaatatatccttttcc 307  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12596528 aatatccgcttgaagatcacacccatttagtatctctgtaacataagcactatccttaccgataaagaaacaacaaatatcaagaaatatatccttttcc 12596429  T
Q  308 atacgatcccttaaaccttcgaaacttatttttagtttcttgtgtatttcatcattgagtatcttttttagctttgataatacactctgccactcttgtt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12596428 atacgatcccttaaaccttcgaaacttatttttagtttcttgtgtatttcatcattgagtatcttttttagctttgataatacactctgccactcttgtt 12596329  T
Q  408 ttctcctcttcaacaagtaagacccaaggatttcaagagctagtggtagtccatcgcagtaggcaactacatctcttgagagaattgcgaagtcttttgt 507  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12596328 ttctcctcttgaacaagtaagacccaaggacttcaagagctagtggtagtccatcgcagtaggcaactacatctcttgagagaattgcgaagtcttttgt 12596229  T
Q  508 tagccatgcctccctaaaagtatgataactgaagagcttaagggactcatgcgcattcaatccctccacttcatatataaagtcaactccaaggatgtca 607  Q
    |  || |||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12596228 tgaccttgcctccctaaaagcatgaaaactgaagagcttaagggactcatgcgcattcaaaccctccacttcatatataaagtcaactccaaggatgtca 12596129  T
Q  608 agtagacgcacatctcttgtggtgaaattctctactgcttttagaattctttcagctggcccctctactaaatccaaaggaatttcaaaaccatccacta 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12596128 agtagacgcacatctcttgtggtgaaattctctactgcttttagaattctttcagctggcccctctactaaatccaaaggaatttcaaaaccatccacta 12596029  T
Q  708 tctttttcctataaatgaaacctatgttgggatttttaagtgaatcgtcaagaatgaatcttaatcnnnnnnnnnncagcaggatatgtattttgttagc 807  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||    
T  12596028 tctttttcctataaatgaaacctatgttgggatttttaagtgaatcgtcaagaatgaatcttaat-acaaaaaaaacagcaggatatgtattttgttagc 12595930  T
Q  808 tttaggttctatttggataaatagtataattaagcacttacagcataagtgtttatgtataaactaatattgtttctataacaaaagat-aaataaagtt 906  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12595929 tttaggttctatttggataaatagtataattaagcacttgcagcataagtgtttatgtataaactaatattgtttctataacaaaagataaaataaagtt 12595830  T
Q  907 aaattgttttcatataaactatgacctggtttcataagctaccttaaagagcttat 962  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12595829 aaattgttttcatataaactatgagctggtttcataagctaccttaaagagcttat 12595774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 9 - 632
Target Start/End: Complemental strand, 15801972 - 15801356
Alignment:
Q  9 aattcttacggtatggtcggtcaatacatcaactacatcttcatggcaccacaatcgactacacttctcaggctcctcaggtgaactttcgcgaacaatt 108  Q
    |||||||||||| || |||| || |||||||||||||||||||   |||||||||||| |||  |||||||||||||||||||||||||| |||||||||    
T  15801972 aattcttacggtttgttcggccagtacatcaactacatcttcaaaacaccacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatt 15801873  T
Q  109 tctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatcaggtatcagcactgttattcca 208  Q
    |||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||  |||||||    
T  15801872 tctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcag-------cacttctattcca 15801780  T
Q  209 atatccgcttgaagaccacaaccatttagtatctctgtaacataggcactatccttaccgataaagaaacaacaaatatcaagaaatatatccttttcca 308  Q
    ||||| || ||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||| | |||||||||||||| ||||||||    
T  15801779 atatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttcca 15801680  T
Q  309 tacgatcccttaaaccttcgaaacttatttttagtttcttgtgtatttcatcattgagtatcttttttagctttgataatacactctgccactcttgttt 408  Q
    || |||||  |||||| || || |||||||||||||||| |||||||| ||||||| ||||||||| |||||| |||| |||||||||||||||| ||||    
T  15801679 tatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcattgggtatcttttgtagcttggatattacactctgccactctcgttt 15801580  T
Q  409 tctcctcttcaacaagtaagacccaaggatttcaagagctagtggtagtccatcgcagtaggcaactacatctcttgagagaattgcgaagtcttttgtt 508  Q
    |||||| || || |||||||| ||||||| |||||||||||||||||||||| | || |||| |||||||||||  ||||| ||   |||  |||   ||    
T  15801579 tctcctattgaataagtaagatccaaggacttcaagagctagtggtagtccaccacaataggaaactacatctccggagagtatgaggaaagcttcactt 15801480  T
Q  509 agccatgcctccctaaaagtatgataactgaagagcttaagggactcatgcgcattcaatccctccacttcatatataaagtcaactccaaggatgtcaa 608  Q
     |    |||||| |||| | |||  |  |||| ||| || | || || ||| |||||||||||||| ||||||| ||||| |||||||||||||||||||    
T  15801479 ggattcgcctccttaaacgcatgccagttgaaaagcctacgagattcgtgcacattcaatccctccgcttcataaataaaatcaactccaaggatgtcaa 15801380  T
Q  609 gtagacgcacatctcttgtggtga 632  Q
    |||||||  |||||||||| ||||    
T  15801379 gtagacgtgcatctcttgttgtga 15801356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 100 - 347
Target Start/End: Complemental strand, 30416830 - 30416590
Alignment:
Q  100 cgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatcaggtatcagcact 199  Q
    ||||||||||||||||||| ||||  ||  ||| |||||||||||||||||||||||||||||||||||| |||||| | |||||| |||       ||     
T  30416830 cgaacaatttctcttcccatgtctcttattaaatcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctatgagg-------aca 30416738  T
Q  200 gttattccaatatccgcttgaagaccacaaccatttagtatctctgtaacataggcactatccttaccgataaagaaacaacaaatatcaagaaatatat 299  Q
    | ||||||||||   ||   ||| ||||| |||||||| ||||| |||||||| || || ||||| ||||||||||||||||| || |||||||||||||    
T  30416737 gatattccaatactagcaaaaagtccacagccatttagaatctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatat 30416638  T
Q  300 ccttttccatacgatcccttaaaccttcgaaacttatttttagtttct 347  Q
    |||||| | ||| ||| |||| ||| ||| | |||||| |||||||||    
T  30416637 ccttttgcttaccatcacttagaccatcgtagcttattcttagtttct 30416590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 629 - 726
Target Start/End: Complemental strand, 12243103 - 12243006
Alignment:
Q  629 gtgaaattctctactgcttttagaattctttcagctggcccctctactaaatccaaaggaatttcaaaaccatccactatctttttcctataaatgaa 726  Q
    ||||| |||||||||| |||||||||||||||||||||| || ||||||||||||| ||||| ||||||||||||||| || |||||| ||| |||||    
T  12243103 gtgaagttctctactgattttagaattctttcagctggctcccctactaaatccaagggaatctcaaaaccatccactctccttttcccatatatgaa 12243006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 302
Target Start/End: Complemental strand, 20837369 - 20837164
Alignment:
Q  90 tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatcagg 189  Q
    ||||||||| | | |||||  |||||||| ||||   |||||| | |||||||||||| ||||||||||||| ||||||| |||||| | |||||| ||     
T  20837369 tgaactttcaccagcaattgatcttcccatgtctctgagcaaatcgtgcattccaagcgtgttattcttttcgacttttacgaggctgcgctctatgaga 20837270  T
Q  190 tatcagcactgttattccaatatccgcttgaagaccacaaccatttagtatctctgtaacataggcactatccttaccgataaagaaacaacaaatatca 289  Q
           |  | |||||||||||| || ||||| ||||| ||||| ||||||||||||||||  || || | ||| || || ||||||||||| || |||    
T  20837269 -------atagatattccaatatcagcatgaagtccacacccattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtca 20837177  T
Q  290 agaaatatatcct 302  Q
    |||||||| ||||    
T  20837176 agaaatatgtcct 20837164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 880 - 923
Target Start/End: Original strand, 43215332 - 43215375
Alignment:
Q  880 tttctataacaaaagataaataaagttaaattgttttcatataa 923  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||    
T  43215332 tttctataacaaaagataaataaagttaaattgcttttatataa 43215375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 305
Target Start/End: Complemental strand, 20811014 - 20810806
Alignment:
Q  90 tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatcagg 189  Q
    ||||||||| | | |||||  |||||||| ||||   |||||| | |||||||||||| ||||||||||||| ||||||| |||||| | |||||| ||     
T  20811014 tgaactttcaccagcaattgatcttcccatgtctctgagcaaatcgtgcattccaagcgtgttattcttttcgacttttacgaggctgcgctctatgaga 20810915  T
Q  190 tatcagcactgttattccaatatccgcttgaagaccacaaccatttagtatctctgtaacataggcactatccttaccgataaagaaacaacaaatatca 289  Q
           |  | ||||||| |||  || ||||| ||||| ||||| ||||||||||||||||  || || | ||| || || ||||||||||| || |||    
T  20810914 -------atagatattccactataagcatgaagtccacacccattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtca 20810822  T
Q  290 agaaatatatcctttt 305  Q
    |||||||| |||||||    
T  20810821 agaaatatgtcctttt 20810806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 880 - 919
Target Start/End: Original strand, 10363703 - 10363743
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcat 919  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  10363703 tttctataacaaaagataaaataaagttaaattgttttcat 10363743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 880 - 928
Target Start/End: Complemental strand, 12460117 - 12460069
Alignment:
Q  880 tttctataacaaaagataaataaagttaaattgttttcatataaactat 928  Q
    ||||||||||||||||||||  |||||| |||||||||| |||||||||    
T  12460117 tttctataacaaaagataaaataagttatattgttttcaaataaactat 12460069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 880 - 947
Target Start/End: Original strand, 14295459 - 14295527
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagcta 947  Q
    |||||||||||||||||||| |||||| ||| ||||||||||||| |||| | ||| |||| |||||||    
T  14295459 tttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttcgtaagcta 14295527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 962
Target Start/End: Complemental strand, 9202865 - 9202782
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagctaccttaaagagcttat 962  Q
    ||||| || ||||||||||| |||||||||||||||||||||||| | || | ||| ||||||||| || ||| |||| |||||    
T  9202865 tttctgtagcaaaagataaaataaagttaaattgttttcatataagcaataagctgttttcataagttatcttgaagaacttat 9202782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 880 - 917
Target Start/End: Original strand, 42583102 - 42583140
Alignment:
Q  880 tttctataacaaaagat-aaataaagttaaattgttttc 917  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  42583102 tttctataacaaaagatgaaataaagttaaattgttttc 42583140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 924
Target Start/End: Complemental strand, 28586883 - 28586838
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaa 924  Q
    |||||||||||||||||||| |||||| ||| ||||||||||||||    
T  28586883 tttctataacaaaagataaaataaagtcaaactgttttcatataaa 28586838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 877 - 929
Target Start/End: Complemental strand, 32969237 - 32969184
Alignment:
Q  877 ttgtttctataacaaaagat-aaataaagttaaattgttttcatataaactatg 929  Q
    |||||||||||||||||||| ||||||||| ||||| |||| |||||| |||||    
T  32969237 ttgtttctataacaaaagataaaataaagtcaaattatttttatataagctatg 32969184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 307; Significance: 1e-172; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 8 - 632
Target Start/End: Complemental strand, 3313839 - 3313222
Alignment:
Q  8 aaattcttacggtatggtcggtcaatacatcaactacatcttcatggcaccacaatcgactacacttctcaggctcctcaggtgaactttcgcgaacaat 107  Q
    |||||||||| ||||||||||||| ||||||||||||||| |||||  ||||||||||||||| ||| ||||||||||||||||||||||| || |||||    
T  3313839 aaattcttacagtatggtcggtcagtacatcaactacatcctcatgataccacaatcgactacgcttttcaggctcctcaggtgaactttcacggacaat 3313740  T
Q  108 ttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatcaggtatcagcactgttattcc 207  Q
    ||||| ||||| |||| | || ||| ||||||||||||||||||||| |||||||| |||||| ||||||| ||| |||||       ||||||||||||    
T  3313739 ttctcgtcccatgtctcgcagtaaatcatgcattccaagcttgttatacttttcaatttttattaggcttcgctcaatcag-------cactgttattcc 3313647  T
Q  208 aatatccgcttgaagaccacaaccatttagtatctctgtaacataggcactatccttaccgataaagaaacaacaaatatcaagaaatatatccttttcc 307  Q
    |||||| || ||||| ||||||||||||||||| | ||| ||||| || |||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  3313646 aatatcagcatgaagtccacaaccatttagtatatttgtgacatatgctctatccttaccgataaagaaacaacacacatcaagaaatatatccttttcc 3313547  T
Q  308 atacgatcccttaaaccttcgaaacttatttttagtttcttgtgtatttcatcattgagtatcttttttagctttgataatacactctgccactcttgtt 407  Q
    ||| ||||||||||||| || || ||||||||||||||||  ||||||| ||||||  ||||||||| ||||||||||||||||||||||||||||||||    
T  3313546 atatgatcccttaaaccgtcaaagcttatttttagtttctcatgtatttgatcattaggtatcttttctagctttgataatacactctgccactcttgtt 3313447  T
Q  408 ttctcctcttcaacaagtaagacccaaggatttcaagagctagtggtagtccatcgcagtaggcaactacatctcttgagagaattgcgaagtcttttgt 507  Q
    |||||||||| ||||||||||| ||||||| ||||||||||||||| |||||| | || ||||||||||||| |||||| |||||   |||  ||| | |    
T  3313446 ttctcctcttgaacaagtaagatccaaggacttcaagagctagtggcagtccaccacaataggcaactacatatcttgaaagaataaggaaaccttctat 3313347  T
Q  508 tagccatgcctccctaaaagtatgataactgaagagcttaagggactcatgcgcattcaatccctccacttcatatataaagtcaactccaaggatgtca 607  Q
    | | | || ||||||||| | ||| | |||||| |||| ||||||||||  || ||||||||||||| |||||||||||||||||||||||||||| |||    
T  3313346 tggacttgtctccctaaacgcatgctgactgaaaagctcaagggactcaaccgaattcaatccctccgcttcatatataaagtcaactccaaggatatca 3313247  T
Q  608 agtagacgcacatctcttgtggtga 632  Q
    |||||||| ||||||||||| ||||    
T  3313246 agtagacgtacatctcttgttgtga 3313222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 624
Target Start/End: Complemental strand, 3363209 - 3362600
Alignment:
Q  8 aaattcttacggtatggtcggtcaatacatcaactacatcttcatggcaccacaatcgactacacttctcaggctcctcaggtgaactttcgcgaacaat 107  Q
    ||||||||||||||| ||| | || ||||| |||||| || |||||||||||||||||  ||  ||| ||||||||||| ||||||||||| ||||||||    
T  3363209 aaattcttacggtatagtctgccagtacattaactacgtcctcatggcaccacaatcgggtatgcttttcaggctcctccggtgaactttcacgaacaat 3363110  T
Q  108 ttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatcaggtatcagcactgttattcc 207  Q
    ||| ||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  3363109 ttcccttcccatgtctcgtagcaaagcatgcattccaagctttttattcttttcaacttttatgaggcttctctctatcaa-------cactgttattcc 3363017  T
Q  208 aatatccgcttgaagaccacaaccatttagtatctctgtaacataggcactatccttaccgataaagaaacaacaaatatcaagaaatatatccttttcc 307  Q
    |||||| || | ||| ||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| || | |||||||||||||| |||||||    
T  3363016 aatatcagcattaagtccacaaccatttagtatctttgtaacataagctctatccttaccgataaagaaacagcagacatcaagaaatatattcttttcc 3362917  T
Q  308 atacgatcccttaaaccttcgaaacttatttttagtttcttgtgtatttcatcattgagtatcttttttagctttgataatacactctgccactcttgtt 407  Q
    ||||||||| ||||||| || || |||||||||||| ||| |||||||| ||||||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  3362916 atacgatcctttaaaccatcaaagcttatttttagtatctcgtgtatttgatcattgggtatcttttctagctttgataatacactccgccactcttgtt 3362817  T
Q  408 ttctcctcttcaacaagtaagacccaaggatttcaagagctagtggtagtccatcgcagtaggcaactacatctcttgagagaattgcgaagtcttttgt 507  Q
    || ||||||| ||||||||||| ||||||| ||||||||||||||||| |||| | || ||||||||||||||||||||||||||   |||||||| |||    
T  3362816 ttttcctcttgaacaagtaagatccaaggacttcaagagctagtggtattccaccacaataggcaactacatctcttgagagaataaggaagtcttgtgt 3362717  T
Q  508 tagccatgcctccctaaaagtatgataactgaagagcttaagggactcatgcgcattcaatccctccacttcatatataaagtcaactccaaggatgtca 607  Q
    | |    |||| || ||||| ||| | || ||| |||| ||||||||||   ||||||||| ||||  ||||||| ||||| |||||| ||||||| | |    
T  3362716 tggaatcgccttccgaaaagcatgtttacagaaaagctcaagggactcactagcattcaattcctctgcttcatagataaaatcaacttcaaggatatta 3362617  T
Q  608 agtagacgcacatctct 624  Q
    |||| ||||| ||||||    
T  3362616 agtacacgcagatctct 3362600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 8 - 624
Target Start/End: Original strand, 3392674 - 3393283
Alignment:
Q  8 aaattcttacggtatggtcggtcaatacatcaactacatcttcatggcaccacaatcgactacacttctcaggctcctcaggtgaactttcgcgaacaat 107  Q
    |||||||||||||||||||   || ||||| |||||| || ||||| |||||||||||  ||| ||||||||||||||| ||||||||||| ||||||||    
T  3392674 aaattcttacggtatggtcttccagtacattaactacgtcctcatgacaccacaatcgggtacgcttctcaggctcctccggtgaactttcacgaacaat 3392773  T
Q  108 ttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatcaggtatcagcactgttattcc 207  Q
    ||| ||||||| |||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  3392774 ttcccttcccatgtctcgtagcaaatcatgcattccaagctttttattcttttcaacttttatgaggcttctctctatcaa-------cactgttattcc 3392866  T
Q  208 aatatccgcttgaagaccacaaccatttagtatctctgtaacataggcactatccttaccgataaagaaacaacaaatatcaagaaatatatccttttcc 307  Q
    |||||| || ||||| ||||||||||||||||||| ||||||||| || |||||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  3392867 aatatcagcatgaagtccacaaccatttagtatctttgtaacataagctctatccttgccgataaagaaacaacagacatcaagaaatatatccttttcc 3392966  T
Q  308 atacgatcccttaaaccttcgaaacttatttttagtttcttgtgtatttcatcattgagtatcttttttagctttgataatacactctgccactcttgtt 407  Q
    |||||||| |||||||| |  || || |||||||||||||  ||||||| ||||||| |||| ||||  |||||||||||||||||||||||||||||||    
T  3392967 atacgatcgcttaaaccattaaagctaatttttagtttctcatgtatttgatcattgggtattttttcaagctttgataatacactctgccactcttgtt 3393066  T
Q  408 ttctcctcttcaacaagtaagacccaaggatttcaagagctagtggtagtccatcgcagtaggcaactacatctcttgagagaattgcgaagtcttttgt 507  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||||||| |||| | || ||||||||||||| ||||||||||||   |||||||| |||    
T  3393067 ttctcctcttcaataagtaagatccaaggacttcaagagctagtggtattccaccacaataggcaactacatatcttgagagaataaggaagtcttctgt 3393166  T
Q  508 tagccatgcctccctaaaagtatgataactgaagagcttaagggactcatgcgcattcaatccctccacttcatatataaagtcaactccaaggatgtca 607  Q
    | |   | ||| |||||||| |||   || ||| |||| |||||||||    ||||||||||||||  ||||||| ||||| |||||| ||||||| | |    
T  3393167 tggaattaccttcctaaaagcatgtccacagaaaagctcaagggactcgctagcattcaatccctctgcttcatagataaaatcaacttcaaggatatta 3393266  T
Q  608 agtagacgcacatctct 624  Q
    |||| ||||| ||||||    
T  3393267 agtacacgcagatctct 3393283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 56 - 455
Target Start/End: Original strand, 3408456 - 3408848
Alignment:
Q  56 accacaatcgactacacttctcaggctcctcaggtgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttatt 155  Q
    ||||||||||||||| |||| |||| ||    | ||||||||| || |||||||||||||||| ||||  ||  ||| ||||||||||||||||||||||    
T  3408456 accacaatcgactacgcttcccaggttctcttgctgaactttcacggacaatttctcttcccatgtctcttattaaatcatgcattccaagcttgttatt 3408555  T
Q  156 cttttcaacttttatgaggcttctctctatcaggtatcagcactgttattccaatatccgcttgaagaccacaaccatttagtatctctgtaacataggc 255  Q
    ||| |||||||||| |||||| |  ||||| |||       || | |||||||||||| || | ||| ||||| ||||||||||||||||||||||||||    
T  3408556 cttctcaacttttaggaggctccggtctatgagg-------accgctattccaatatcagcataaagtccacagccatttagtatctctgtaacataggc 3408648  T
Q  256 actatccttaccgataaagaaacaacaaatatcaagaaatatatccttttccatacgatcccttaaaccttcgaaacttatttttagtttcttgtgtatt 355  Q
     || |||||||| ||||||||||||||||| |||||||||||||||||| |||||  |||| ||||||| ||  | |||||| | || |||| ||| | |    
T  3408649 cctgtccttaccaataaagaaacaacaaatgtcaagaaatatatcctttaccatatcatcctttaaaccatcatagcttattctcagcttctcgtgcact 3408748  T
Q  356 tcatcattgagtatcttttttagctttgataatacactctgccactcttgttttctcctcttcaacaagtaagacccaaggatttcaagagctagtggta 455  Q
    | ||||||| | ||  | | || |||||||| ||| ||   ||| ||||||||| ||||||  || ||||| || ||||||| ||||||||| |||||||    
T  3408749 tgatcattgggaattctctctaactttgatagtacgcttatccattcttgttttgtcctctcaaataagtaggatccaaggacttcaagagccagtggta 3408848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 90 - 324
Target Start/End: Original strand, 7165837 - 7166064
Alignment:
Q  90 tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatcagg 189  Q
    |||||||| |||||||||||||||||||| ||||   |||||| |||||||||||||||||||||||||||||| ||| |  ||||| | |||||  |||    
T  7165837 tgaactttggcgaacaatttctcttcccatgtctctaagcaaatcatgcattccaagcttgttattcttttcaattttcacaaggctccgctctacgagg 7165936  T
Q  190 tatcagcactgttattccaatatccgcttgaagaccacaaccatttagtatctctgtaacataggcactatccttaccgataaagaaacaacaaatatca 289  Q
           || ||||||||||| || || | ||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||    
T  7165937 -------accgttattccaatgtcagcataaagtccacaaccatttagtatctcagtaacataggctctatccttgccgataaagaaacaacatatatca 7166029  T
Q  290 agaaatatatccttttccatacgatcccttaaacc 324  Q
    ||||||||||||||| |||||  |||| |||||||    
T  7166030 agaaatatatcctttgccatatcatcctttaaacc 7166064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 43 - 324
Target Start/End: Original strand, 3326106 - 3326380
Alignment:
Q  43 acatcttcatggcaccacaatcgactacacttctcaggctcctcaggtgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattc 142  Q
    ||||| |||||  ||||||||| ||||| |||| ||||||| |  |  |||||||| |||| |||||||||||||| ||||  || ||||  ||||||||    
T  3326106 acatcctcatgaaaccacaatctactacgcttcccaggctcttttgcagaactttcacgaataatttctcttcccatgtctcttatcaaacaatgcattc 3326205  T
Q  143 caagcttgttattcttttcaacttttatgaggcttctctctatcaggtatcagcactgttattccaatatccgcttgaagaccacaaccatttagtatct 242  Q
    ||||||||||||||||||||| |||||  ||||| | |||||| ||     | ||||  |||||||||||  || | ||| ||||| |||||||||||||    
T  3326206 caagcttgttattcttttcaatttttacaaggctccgctctatgag-----aacact--tattccaatatttgcataaagtccacagccatttagtatct 3326298  T
Q  243 ctgtaacataggcactatccttaccgataaagaaacaacaaatatcaagaaatatatccttttccatacgatcccttaaacc 324  Q
    ||||||| | ||| |||||||| || |||||||||||||| || |||||||||||||| |||||||||  |||| |||||||    
T  3326299 ctgtaacttcggctctatccttgcctataaagaaacaacatatgtcaagaaatatatctttttccatatcatcctttaaacc 3326380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 90 - 310
Target Start/End: Original strand, 3287625 - 3287838
Alignment:
Q  90 tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatcagg 189  Q
    ||||||||| |||||||||||||||||||  |||  ||  ||| |||||||| ||||||||||||  || |||||||||| |||||| | |||||  |||    
T  3287625 tgaactttcacgaacaatttctcttcccatatctcttattaaatcatgcatttcaagcttgttataattgtcaacttttaggaggctccgctctacgagg 3287724  T
Q  190 tatcagcactgttattccaatatccgcttgaagaccacaaccatttagtatctctgtaacataggcactatccttaccgataaagaaacaacaaatatca 289  Q
           |||||||||||| | || || | ||| ||||| ||||||||||||||||| |||||||  || |||||||| ||||||||||||||||| |||    
T  3287725 -------actgttattccagtgtcagcatcaagtccacagccatttagtatctctgtgacataggttctgtccttaccaataaagaaacaacaaatgtca 3287817  T
Q  290 agaaatatatccttttccata 310  Q
    |||||||||||||||||||||    
T  3287818 agaaatatatccttttccata 3287838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 56 - 306
Target Start/End: Original strand, 3268362 - 3268605
Alignment:
Q  56 accacaatcgactacacttctcaggctcctcaggtgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttatt 155  Q
    ||||||||||||||| |||| ||||||| |    ||| ||||  |||||||| |||||||||| ||||  |||||||  |||||||||||| |||||| |    
T  3268362 accacaatcgactacgcttcccaggctcttttattgatcttttacgaacaatctctcttcccatgtctcttagcaaactatgcattccaagtttgttact 3268461  T
Q  156 cttttcaacttttatgaggcttctctctatcaggtatcagcactgttattccaatatccgcttgaagaccacaaccatttagtatctctgtaacataggc 255  Q
    |||||||| ||||| ||||||||||||||| |||       || |||||||||||| | || | ||   ||||||||| ||  ||||||| |||||| ||    
T  3268462 cttttcaatttttaggaggcttctctctatgagg-------acagttattccaataccagcataaaagtcacaaccatctataatctctgaaacatatgc 3268554  T
Q  256 actatccttaccgataaagaaacaacaaatatcaagaaatatatccttttc 306  Q
     || |||||||| |||||||||||||| || ||||||||||||||||||||    
T  3268555 tctgtccttaccaataaagaaacaacatatgtcaagaaatatatccttttc 3268605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 90 - 337
Target Start/End: Original strand, 3263698 - 3263938
Alignment:
Q  90 tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatcagg 189  Q
    ||||||||| | ||||||||||||||||| ||||  ||  ||| ||||||||||||  |||||||||||||| | |||||  ||||| |  ||||| |||    
T  3263698 tgaactttcacaaacaatttctcttcccatgtctcttattaaatcatgcattccaattttgttattcttttccatttttacaaggctccgttctatgagg 3263797  T
Q  190 tatcagcactgttattccaatatccgcttgaagaccacaaccatttagtatctctgtaacataggcactatccttaccgataaagaaacaacaaatatca 289  Q
     |||      | |||||||||| | || ||||| ||||| ||||| ||||||||||| || || || || || || ||||||||||||||||| || |||    
T  3263798 -atc------gctattccaataacagcatgaagtccacagccattaagtatctctgttacgtaagctctgtctttgccgataaagaaacaacatatgtca 3263890  T
Q  290 agaaatatatccttttccatacgatcccttaaaccttcgaaacttatt 337  Q
    |||||||||||||||||||||| |||| ||||||| ||| ||||||||    
T  3263891 agaaatatatccttttccataccatcctttaaaccatcgtaacttatt 3263938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 56 - 298
Target Start/End: Complemental strand, 13807838 - 13807603
Alignment:
Q  56 accacaatcgactacacttctcaggctcctcaggtgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttatt 155  Q
    ||||||||||||||| |||| || |||||||   ||| ||||  | |||||| |||||||||| |||| |||| ||| ||||||||||||| || | |||    
T  13807838 accacaatcgactacgcttcccaagctcctcttctgatcttttacaaacaatctctcttcccatgtctcgtagtaaaccatgcattccaagtttatcatt 13807739  T
Q  156 cttttcaacttttatgaggcttctctctatcaggtatcagcactgttattccaatatccgcttgaagaccacaaccatttagtatctctgtaacataggc 255  Q
    |||||| |||||||  ||||| | |||||| |||       |  |||||||| ||||| || | ||| |||||||||| ||| ||||||| |||||||||    
T  13807738 cttttcgacttttagaaggctccgctctatgagg-------atagttattcccatatcagcattaagtccacaaccatctagaatctctgaaacataggc 13807646  T
Q  256 actatccttaccgataaagaaacaacaaatatcaagaaatata 298  Q
     || | ||| |||||||||||||||||||| ||||||||||||    
T  13807645 tctcttctttccgataaagaaacaacaaatgtcaagaaatata 13807603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 56 - 339
Target Start/End: Complemental strand, 13786579 - 13786303
Alignment:
Q  56 accacaatcgactacacttctcaggctcctcaggtgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttatt 155  Q
    ||||||||||||||| || | | ||||| |  | ||||||||| ||||||||||||||||||| ||||  ||  ||   ||||||||||||  |||||||    
T  13786579 accacaatcgactacgctcccctggctcttttgctgaactttcacgaacaatttctcttcccatgtctcttattaacttatgcattccaagggtgttatt 13786480  T
Q  156 cttttcaacttttatgaggcttctctctatcaggtatcagcactgttattccaatatccgcttgaagaccacaaccatttagtatctctgtaacataggc 255  Q
     |  |||||||||| |||||| | |||||| |||       || | |||||||||||| ||   ||| ||||| ||||||||||||||||||||||||||    
T  13786479 gtcctcaacttttaagaggctccgctctatgagg-------acagctattccaatatcagcacaaagtccacagccatttagtatctctgtaacataggc 13786387  T
Q  256 actatccttaccgataaagaaacaacaaatatcaagaaatatatccttttccatacgatcccttaaaccttcgaaacttatttt 339  Q
      | |||| ||| |||||||||||||| || |||||||||| | ||||| |||||  |||| ||||||| ||  ||||||||||    
T  13786386 tttgtcctcaccaataaagaaacaacatatgtcaagaaatacagcctttaccatatcatccattaaaccatcataacttatttt 13786303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 90 - 306
Target Start/End: Complemental strand, 31174758 - 31174549
Alignment:
Q  90 tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatcagg 189  Q
    |||| |||||| ||||||| ||||||||| ||||   |||||| ||||||||  |||||||||||| || ||||||||||||||||| | ||| || |||    
T  31174758 tgaaatttcgccaacaattgctcttcccatgtctctgagcaaatcatgcatttgaagcttgttatttttatcaacttttatgaggctgcgctcaatgagg 31174659  T
Q  190 tatcagcactgttattccaatatccgcttgaagaccacaaccatttagtatctctgtaacataggcactatccttaccgataaagaaacaacaaatatca 289  Q
           ||   |||||||||||| || ||||| ||||| ||||| ||||||||||||||||  || || | ||| || || ||||||||||| || |||    
T  31174658 -------acaactattccaatatcagcatgaagcccacagccattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtca 31174566  T
Q  290 agaaatatatccttttc 306  Q
    |||||||||||||||||    
T  31174565 agaaatatatccttttc 31174549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 90 - 305
Target Start/End: Original strand, 3399790 - 3399998
Alignment:
Q  90 tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatcagg 189  Q
    ||||||||| | | ||||| ||||||||| ||||   |||||| |||||||||||||||||||||||||||| ||||||| |||||| | |||           
T  3399790 tgaactttcaccagcaattgctcttcccatgtctctgagcaaatcatgcattccaagcttgttattcttttcgacttttaggaggctgcgctc------- 3399882  T
Q  190 tatcagcactgttattccaatatccgcttgaagaccacaaccatttagtatctctgtaacataggcactatccttaccgataaagaaacaacaaatatca 289  Q
    ||| || |  | |||||||||||| || ||||| |||||  |||| ||||||||||||||||  || || | ||| || || ||||||||||| || |||    
T  3399883 tatgagaatagatattccaatatcagcatgaagtccacatgcattaagtatctctgtaacatcagctctgttctttccaatcaagaaacaacatatgtca 3399982  T
Q  290 agaaatatatcctttt 305  Q
    |||||||| |||||||    
T  3399983 agaaatatgtcctttt 3399998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 880 - 916
Target Start/End: Complemental strand, 37353365 - 37353329
Alignment:
Q  880 tttctataacaaaagataaataaagttaaattgtttt 916  Q
    |||||||||||||||||||||||||||||||||||||    
T  37353365 tttctataacaaaagataaataaagttaaattgtttt 37353329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 880 - 944
Target Start/End: Complemental strand, 35374490 - 35374425
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataag 944  Q
    |||||||| | ||||||||| |||||||||||||||||||||||| |||| | ||| |||||||||    
T  35374490 tttctatagcgaaagataaaataaagttaaattgttttcatataagctataatctgatttcataag 35374425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 884 - 928
Target Start/End: Complemental strand, 42237535 - 42237490
Alignment:
Q  884 tataacaaaagataaa-taaagttaaattgttttcatataaactat 928  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||    
T  42237535 tataacaaaagataaaataaagttaaattgttttcatataagctat 42237490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 962
Target Start/End: Original strand, 4558751 - 4558834
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagctaccttaaagagcttat 962  Q
    ||||||||| |||||||||| |||||||||||| ||||||||||  |||| | ||| || ||||||||| | || |||||||||    
T  4558751 tttctataataaaagataaaataaagttaaattattttcatatatgctataagctgtttccataagctatcctagagagcttat 4558834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 947
Target Start/End: Original strand, 27049321 - 27049388
Alignment:
Q  880 tttctataacaaaagataaataaagttaaattgttttcatataaactatgacctggtttcataagcta 947  Q
    |||||||| |||||||||||||||||| |||| ||||| ||||| |||| | ||  ||||||||||||    
T  27049321 tttctatagcaaaagataaataaagttcaattattttcgtataagctataaacttttttcataagcta 27049388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 928
Target Start/End: Original strand, 1112806 - 1112855
Alignment:
Q  880 tttctataacaaaagat-aaataaagttaaattgttttcatataaactat 928  Q
    ||||||||||||||||| |||||| ||||||||||||||| |||| ||||    
T  1112806 tttctataacaaaagataaaataaggttaaattgttttcacataagctat 1112855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 884 - 928
Target Start/End: Original strand, 8909007 - 8909052
Alignment:
Q  884 tataacaaaagata-aataaagttaaattgttttcatataaactat 928  Q
    |||||||||||||| |||| ||||||||||||||||||||| ||||    
T  8909007 tataacaaaagatataatatagttaaattgttttcatataagctat 8909052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 883 - 923
Target Start/End: Complemental strand, 37444529 - 37444488
Alignment:
Q  883 ctataacaaaagataaa-taaagttaaattgttttcatataa 923  Q
    ||||||||||||||||| |||||||||||||||||| |||||    
T  37444529 ctataacaaaagataaagtaaagttaaattgttttcgtataa 37444488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 90 - 305
Target Start/End: Original strand, 7426 - 7634
Alignment:
Q  90 tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatcagg 189  Q
    ||||||| ||||||| ||||||||||||| ||||  ||  ||| |||||||||||||||||||||||||||| |||||||  ||||| |||||||| |||    
T  7426 tgaacttccgcgaactatttctcttcccatgtctcttattaaatcatgcattccaagcttgttattcttttcgacttttagaaggctcctctctatgagg 7525  T
Q  190 tatcagcactgttattccaatatccgcttgaagaccacaaccatttagtatctctgtaacataggcactatccttaccgataaagaaacaacaaatatca 289  Q
           || | |||||||||||| ||   ||| |||||||||||||||||||| ||||||||| |  | ||||| ||||||||||||||||| | ||||    
T  7526 -------acagctattccaatatcagcaaaaagtccacaaccatttagtatctcggtaacatagtctttgtccttgccgataaagaaacaacatacatca 7618  T
Q  290 agaaatatatcctttt 305  Q
    ||||||||| ||||||    
T  7619 agaaatatagcctttt 7634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 7e-30; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 90 - 303
Target Start/End: Original strand, 6907020 - 6907226
Alignment:
Q  90 tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatcagg 189  Q
    ||||||| | ||||||||||||||||||| ||||  ||  ||| ||||||||||||||||||||||||||||||||||||  ||||| |||||||| |||    
T  6907020 tgaacttccacgaacaatttctcttcccatgtctcttattaaatcatgcattccaagcttgttattcttttcaacttttaaaaggctcctctctatgagg 6907119  T
Q  190 tatcagcactgttattccaatatccgcttgaagaccacaaccatttagtatctctgtaacataggcactatccttaccgataaagaaacaacaaatatca 289  Q
           || | |||||| ||| | ||   ||| |||||||| ||||||||||| ||||||||| | || ||||| ||||||||||||||||| | ||||    
T  6907120 -------acagctattcctataccagcaaaaagtccacaaccgtttagtatctcggtaacatagtctctgtccttgccgataaagaaacaacatacatca 6907212  T
Q  290 agaaatatatcctt 303  Q
    ||||||||| ||||    
T  6907213 agaaatatagcctt 6907226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 103 - 347
Target Start/End: Original strand, 32412146 - 32412383
Alignment:
Q  103 acaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatcaggtatcagcactgtt 202  Q
    |||||||||||||||| ||||  ||||| | ||||||||||||| |||||||||||||||| |||||  |||||||  ||||  ||        || |||    
T  32412146 acaatttctcttcccatgtctcttagcagatcatgcattccaagtttgttattcttttcaatttttacaaggcttcgttctacgaga-------accgtt 32412238  T
Q  203 attccaatatccgcttgaagaccacaaccatttagtatctctgtaacataggcactatccttaccgataaagaaacaacaaatatcaagaaatatatcct 302  Q
    |||||||| || || | ||| ||||  |||||||||||||  ||||||||||| || ||||| |||||||||||| |||| || ||||||||||||||||    
T  32412239 attccaatgtcagcataaagtccacgcccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatcct 32412338  T
Q  303 tttccatacgatcccttaaaccttcgaaacttatttttagtttct 347  Q
    ||||||||  |||| ||||||| ||  | |||||| |||||||||    
T  32412339 tttccatatcatcctttaaaccgtcatagcttattcttagtttct 32412383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 880 - 947
Target Start/End: Complemental strand, 36783451 - 36783383
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagcta 947  Q
    |||||||| ||||||||||| |||||| |||||||||||||||||||||| | ||| ||||||||||||    
T  36783451 tttctataccaaaagataaaataaagtaaaattgttttcatataaactattagctgttttcataagcta 36783383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 880 - 926
Target Start/End: Complemental strand, 15304464 - 15304417
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaact 926  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  15304464 tttctataacaaaagataaaataaagttaaattgttttcatataaact 15304417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 880 - 943
Target Start/End: Original strand, 1395624 - 1395688
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataa 943  Q
    |||||||||||||||||||| |||||| ||||| ||||||||||| |||||| ||| ||||||||    
T  1395624 tttctataacaaaagataaaataaagtcaaattattttcatataagctatgaactgttttcataa 1395688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 880 - 923
Target Start/End: Complemental strand, 10101593 - 10101549
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataa 923  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  10101593 tttctataacaaaagataaaataaagttaaattgttttcatataa 10101549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 880 - 923
Target Start/End: Complemental strand, 10212518 - 10212474
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataa 923  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  10212518 tttctataacaaaagataaaataaagttaaattgttttcatataa 10212474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 880 - 962
Target Start/End: Complemental strand, 33405284 - 33405201
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagctaccttaaagagcttat 962  Q
    |||||||| |||||| |||| ||||||||| |||||||||||||| |||| | ||| |||||||||||| ||| |||| |||||    
T  33405284 tttctatagcaaaaggtaaaataaagttaatttgttttcatataagctataagctgttttcataagctatcttgaagaacttat 33405201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 878 - 923
Target Start/End: Original strand, 42808930 - 42808976
Alignment:
Q  878 tgtttctataacaaaagataaa-taaagttaaattgttttcatataa 923  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||    
T  42808930 tgtttctataacaaaagataaaataaagttaaattgtttttatataa 42808976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 880 - 960
Target Start/End: Original strand, 52618956 - 52619037
Alignment:
Q  880 tttctataacaaaagat-aaataaagttaaattgttttcatataaactatgacctggtttcataagctaccttaaagagctt 960  Q
    |||||| |||||| ||| |||||||||||||||||||||||||||  ||| | ||| ||||| |||||| ||| ||||||||    
T  52618956 tttctaaaacaaatgattaaataaagttaaattgttttcatataagttataagctgttttcacaagctatcttgaagagctt 52619037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 884 - 947
Target Start/End: Complemental strand, 37689497 - 37689433
Alignment:
Q  884 tataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagcta 947  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||| | ||  ||||||||||||    
T  37689497 tataacaaaagataaagtaaagttaaattattttcatataagctataaactattttcataagcta 37689433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 880 - 923
Target Start/End: Original strand, 42809254 - 42809298
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataa 923  Q
    |||||||||||||||||||| || |||||||||||||||||||||    
T  42809254 tttctataacaaaagataaaatatagttaaattgttttcatataa 42809298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 880 - 928
Target Start/End: Original strand, 50952287 - 50952334
Alignment:
Q  880 tttctataacaaaagataaataaagttaaattgttttcatataaactat 928  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| ||||    
T  50952287 tttctataacaaaggataaataaagtt-aattgttttcatataagctat 50952334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 923
Target Start/End: Complemental strand, 48597706 - 48597663
Alignment:
Q  880 tttctataacaaaagataaataaagttaaattgttttcatataa 923  Q
    ||||||||||||||||||||| |||| |||| ||||||||||||    
T  48597706 tttctataacaaaagataaattaagtcaaatggttttcatataa 48597663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 844 - 916
Target Start/End: Complemental strand, 2128398 - 2128331
Alignment:
Q  844 cttacagcataagtgtttatgtataaactaatattgtttctataacaaaagataaa-taaagttaaattgtttt 916  Q
    |||| |||||||| |||||||||||| |||      |||||||||||||||||||| |||||||||||||||||    
T  2128398 cttatagcataagcgtttatgtataagcta------tttctataacaaaagataaaataaagttaaattgtttt 2128331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 885 - 927
Target Start/End: Original strand, 2321133 - 2321175
Alignment:
Q  885 ataacaaaagataaataaagttaaattgttttcatataaacta 927  Q
    ||||||||||||||||||||| ||| | |||||||||||||||    
T  2321133 ataacaaaagataaataaagtcaaactattttcatataaacta 2321175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 908 - 961
Target Start/End: Complemental strand, 20874392 - 20874339
Alignment:
Q  908 aattgttttcatataaactatgacctggtttcataagctaccttaaagagctta 961  Q
    ||||||||||||||||||||| | ||| |||||||||||| | |||| ||||||    
T  20874392 aattgttttcatataaactataagctgttttcataagctatcctaaatagctta 20874339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 928
Target Start/End: Complemental strand, 32095308 - 32095259
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactat 928  Q
    |||||||||||||||||||| | |||||||||||||||  ||||||||||    
T  32095308 tttctataacaaaagataaaattaagttaaattgtttttgtataaactat 32095259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 928
Target Start/End: Complemental strand, 49587033 - 49586984
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactat 928  Q
    |||||||||||||||||||| |||||| ||| ||||||||||||| ||||    
T  49587033 tttctataacaaaagataaaataaagtcaaactgttttcatataagctat 49586984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 7e-27; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 42 - 305
Target Start/End: Original strand, 14768039 - 14768296
Alignment:
Q  42 tacatcttcatggcaccacaatcgactacacttctcaggctcctcaggtgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcatt 141  Q
    |||||| || ||| || |||||||||||| |||  ||||||| |  ||||||||||  || |||||||||||||||| |||   || |||| ||||||||    
T  14768039 tacatcctcgtggaacaacaatcgactacgctttccaggctcttttggtgaactttgacggacaatttctcttcccatgtcccatatcaaatcatgcatt 14768138  T
Q  142 ccaagcttgttattcttttcaacttttatgaggcttctctctatcaggtatcagcactgttattccaatatccgcttgaagaccacaaccatttagtatc 241  Q
      |||||||||||||||| ||||||||| |||||| |  ||||| |||       || | |||||||||||| || | ||| ||||| ||||||| ||||    
T  14768139 tgaagcttgttattctttacaacttttaagaggctccgttctatgagg-------acagatattccaatatcagcataaagtccacatccatttaatatc 14768231  T
Q  242 tctgtaacat-aggcactatccttaccgataaagaaacaacaaatatcaagaaatatatcctttt 305  Q
    |||||||| | |||| |||||||| || ||||||||| |||| || |||||||||||||||||||    
T  14768232 tctgtaacgttaggctctatccttgccaataaagaaaaaacatatgtcaagaaatatatcctttt 14768296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 897 - 947
Target Start/End: Original strand, 18066099 - 18066149
Alignment:
Q  897 aaataaagttaaattgttttcatataaactatgacctggtttcataagcta 947  Q
    ||||||||||||||||||||||||||| |||| | ||| ||||||||||||    
T  18066099 aaataaagttaaattgttttcatataagctataagctgttttcataagcta 18066149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 821 - 928
Target Start/End: Original strand, 37474656 - 37474758
Alignment:
Q  821 tggataaatagtataattaagcacttacagcataagtgtttatgtataaactaatattgtttctataacaaaagat-aaataaagttaaattgttttcat 919  Q
    |||||||||||  |||||||||||||| ||| |||||||||||| ||||||||      |||| ||||||||| || |||||||||  |  |||||||||    
T  37474656 tggataaatagcttaattaagcacttatagcttaagtgtttatgcataaacta------tttcgataacaaaaaataaaataaagtcgatctgttttcat 37474749  T
Q  920 ataaactat 928  Q
    |||||||||    
T  37474750 ataaactat 37474758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 880 - 947
Target Start/End: Original strand, 914034 - 914102
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagcta 947  Q
    |||||||||||||||||||| |||| ||  ||||||||| ||||||||||||  || ||||||||||||    
T  914034 tttctataacaaaagataaaataaaatttgattgttttcttataaactatgatttgttttcataagcta 914102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 880 - 923
Target Start/End: Original strand, 3673760 - 3673804
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataa 923  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  3673760 tttctataacaaaatataaaataaagttaaattgttttcatataa 3673804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 884 - 947
Target Start/End: Complemental strand, 18962151 - 18962087
Alignment:
Q  884 tataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagcta 947  Q
    |||||||||||||||| |||||||||| ||||||||||||| |||| | ||  ||||||||||||    
T  18962151 tataacaaaagataaaataaagttaaactgttttcatataagctataaactattttcataagcta 18962087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 922
Target Start/End: Complemental strand, 40837545 - 40837502
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatata 922  Q
    |||||||||||||||||||| |||||| ||||||||||||||||    
T  40837545 tttctataacaaaagataaattaaagtcaaattgttttcatata 40837502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 880 - 945
Target Start/End: Original strand, 42592292 - 42592358
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagc 945  Q
    |||||||| ||||||||||| | ||||||| |||||||||||||| |||| | ||| ||||||||||    
T  42592292 tttctataccaaaagataaaattaagttaacttgttttcatataagctataagctgttttcataagc 42592358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 887 - 947
Target Start/End: Original strand, 11513858 - 11513919
Alignment:
Q  887 aacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagcta 947  Q
    ||||||||||||| |||||| ||||||||||||||||| |||| |  || ||||||||||||    
T  11513858 aacaaaagataaaataaagtcaaattgttttcatataagctataagttgttttcataagcta 11513919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 881 - 945
Target Start/End: Original strand, 33256694 - 33256759
Alignment:
Q  881 ttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagc 945  Q
    ||||||||||| ||||||| |||||| ||| |||||||||||||||||| | | | ||||||||||    
T  33256694 ttctataacaatagataaaataaagtcaaactgttttcatataaactataagcagttttcataagc 33256759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 944
Target Start/End: Original strand, 39567856 - 39567921
Alignment:
Q  880 tttctataacaaaagat-aaataaagttaaattgttttcatataaactatgacctggtttcataag 944  Q
    ||||||||||||||||| |||||||||||||||||||  | |||| |||| | ||| |||||||||    
T  39567856 tttctataacaaaagataaaataaagttaaattgtttcaagataagctataagctgttttcataag 39567921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 6e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 49 - 306
Target Start/End: Original strand, 8372859 - 8373109
Alignment:
Q  49 tcatggcaccacaatcgactacacttctcaggctcctcaggtgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagct 148  Q
    ||||| |||||||||||||||  ||| |||||||| |  | |||||||||||  || ||| ||||||||| |||  |||| ||| |||||||   || ||    
T  8372859 tcatgacaccacaatcgactatgcttttcaggctcttttgctgaactttcgctgacgattgctcttcccatgtcgcgtagtaaatcatgcatctgaaact 8372958  T
Q  149 tgttattcttttcaacttttatgaggcttctctctatcaggtatcagcactgttattccaatatccgcttgaagaccacaaccatttagtatctctgtaa 248  Q
    |||||||||| ||||||||||||||||| | |||       ||| || || | || ||||||||| || ||||| ||||||||||| || |||||||| |    
T  8372959 tgttattcttatcaacttttatgaggctacgctc-------tataagaacagatactccaatatcagcatgaagtccacaaccattaaggatctctgtga 8373051  T
Q  249 cataggcactatccttaccgataaagaaacaacaaatatcaagaaatatatccttttc 306  Q
    |||   | || | ||| || || ||||||||||| || ||||||||||||||||||||    
T  8373052 catcaactctgttctttccaatgaagaaacaacatatgtcaagaaatatatccttttc 8373109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 890 - 949
Target Start/End: Original strand, 25296948 - 25297007
Alignment:
Q  890 aaaagataaataaagttaaattgttttcatataaactatgacctggtttcataagctacc 949  Q
    |||| |||||| ||||||||||||||||||||||||||| | ||| |||||||| |||||    
T  25296948 aaaatataaattaagttaaattgttttcatataaactataagctgttttcataaactacc 25297007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 882 - 946
Target Start/End: Complemental strand, 9527205 - 9527140
Alignment:
Q  882 tctataacaaaagata-aataaagttaaattgttttcatataaactatgacctggtttcataagct 946  Q
    |||||||||||||||| |||||||| ||| |||||||||||||||||| |  || |||||||||||    
T  9527205 tctataacaaaagatataataaagtcaaactgttttcatataaactataagttgttttcataagct 9527140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 880 - 923
Target Start/End: Complemental strand, 39591584 - 39591540
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataa 923  Q
    |||||||||||||||||||| |||||| |||||||||||||||||    
T  39591584 tttctataacaaaagataaaataaagtcaaattgttttcatataa 39591540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 880 - 947
Target Start/End: Complemental strand, 40689103 - 40689035
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagcta 947  Q
    |||||||| ||||||||||| |||||||||||| ||||||||||| |||| | |||  |||||||||||    
T  40689103 tttctatagcaaaagataaaataaagttaaattattttcatataagctataagctgtgttcataagcta 40689035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 924
Target Start/End: Original strand, 35266852 - 35266897
Alignment:
Q  880 tttctataacaaaagat-aaataaagttaaattgttttcatataaa 924  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||    
T  35266852 tttctataacaaatgattaaataaagttaaatttttttcatataaa 35266897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 916
Target Start/End: Complemental strand, 43153019 - 43152982
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgtttt 916  Q
    |||||||||||||||||||| |||||||||||||||||    
T  43153019 tttctataacaaaagataaaataaagttaaattgtttt 43152982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 899 - 949
Target Start/End: Complemental strand, 33723479 - 33723429
Alignment:
Q  899 ataaagttaaattgttttcatataaactatgacctggtttcataagctacc 949  Q
    ||||||| |||||||||||||||||||||||| ||| ||||||||||||||    
T  33723479 ataaagtcaaattgttttcatataaactatgaactgttttcataagctacc 33723429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 880 - 952
Target Start/End: Original strand, 49517023 - 49517096
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagctacctta 952  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||| |||| | ||| |||||||||||| ||||    
T  49517023 tttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcataagctagctta 49517096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 885 - 928
Target Start/End: Complemental strand, 28389184 - 28389141
Alignment:
Q  885 ataacaaaagataaataaagttaaattgttttcatataaactat 928  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||    
T  28389184 ataacaaaagataaataaagtcaaattgttttcctataaactat 28389141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 880 - 961
Target Start/End: Original strand, 6074427 - 6074509
Alignment:
Q  880 tttctataacaaaagataa-ataaagttaaattgttttcatataaactatgacctggtttcataagctaccttaaagagctta 961  Q
    ||||||||||||||||| | ||||||||||| ||||||||||||| ||||||  || |||| ||||||| | | |||||||||    
T  6074427 tttctataacaaaagatgatataaagttaaactgttttcatataagctatgagttgttttcttaagctagcctgaagagctta 6074509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 880 - 947
Target Start/End: Complemental strand, 27738297 - 27738229
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagcta 947  Q
    |||||| ||||||||||||| |||||| ||||||||||||||||| |||| |  || ||||||||||||    
T  27738297 tttctacaacaaaagataaaataaagtcaaattgttttcatataagctataatttgttttcataagcta 27738229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 879 - 962
Target Start/End: Complemental strand, 44032117 - 44032033
Alignment:
Q  879 gtttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagctaccttaaagagcttat 962  Q
    |||||||||||||||| |||| |||||| ||||||||||||||||| |||| | ||  |||| |||| || ||| ||||||||||    
T  44032117 gtttctataacaaaagctaaaataaagtcaaattgttttcatataagctataaactattttcttaagttatcttgaagagcttat 44032033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 884 - 962
Target Start/End: Complemental strand, 7274052 - 7273973
Alignment:
Q  884 tataacaaaagat-aaataaagttaaattgttttcatataaactatgacctggtttcataagctaccttaaagagcttat 962  Q
    ||||||||||||| ||||||||| |||||||||||||| ||  ||| | ||| || ||||| ||||||| ||||||||||    
T  7274052 tataacaaaagatgaaataaagtcaaattgttttcatacaagttataagctgtttccataaactaccttgaagagcttat 7273973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 880 - 962
Target Start/End: Original strand, 7472265 - 7472347
Alignment:
Q  880 tttctataacaaaagataaataaagttaaattgttttcatataaactatgacctggtttcataagctaccttaaagagcttat 962  Q
    |||||||||||||||||| |  |||||||||||||||  ||||| |||| | ||| || ||||||||| |||  |||||||||    
T  7472265 tttctataacaaaagatataataagttaaattgtttttgtataatctataagctgtttccataagctatcttggagagcttat 7472347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 875 - 928
Target Start/End: Original strand, 47877070 - 47877124
Alignment:
Q  875 tattgtttctataacaaaagataaa-taaagttaaattgttttcatataaactat 928  Q
    |||| |||| ||||||||||||||| |||| | ||||||||||||||||||||||    
T  47877070 tattatttcaataacaaaagataaaataaaatcaaattgttttcatataaactat 47877124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 924
Target Start/End: Complemental strand, 5756803 - 5756758
Alignment:
Q  880 tttctataacaaaagataa-ataaagttaaattgttttcatataaa 924  Q
    ||||||||||||||||| | ||||||||||| ||||||||||||||    
T  5756803 tttctataacaaaagatgatataaagttaaactgttttcatataaa 5756758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 920
Target Start/End: Complemental strand, 14737822 - 14737781
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcata 920  Q
    |||||||||||||||||||| |||||| ||||||||||||||    
T  14737822 tttctataacaaaagataaaataaagtcaaattgttttcata 14737781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 928
Target Start/End: Original strand, 15360847 - 15360896
Alignment:
Q  880 tttctataacaaaagat-aaataaagttaaattgttttcatataaactat 928  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||||| ||||    
T  15360847 tttctataacaaaagataaaataaagtcaaactgttttcatataagctat 15360896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 928
Target Start/End: Original strand, 26630416 - 26630465
Alignment:
Q  880 tttctataacaaaagat-aaataaagttaaattgttttcatataaactat 928  Q
    |||||||||||||| || ||||||||| ||||||||||||||||| ||||    
T  26630416 tttctataacaaaaaatgaaataaagtaaaattgttttcatataagctat 26630465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 928
Target Start/End: Complemental strand, 31517857 - 31517808
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactat 928  Q
    |||||| ||||||||||||| ||||||||||||| |||||||||| ||||    
T  31517857 tttctacaacaaaagataaaataaagttaaattgatttcatataagctat 31517808  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 880 - 946
Target Start/End: Complemental strand, 9093673 - 9093606
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagct 946  Q
    |||||||| ||||||||||| |||||||||||||||||| ||||| |||| | ||| |||||||||||    
T  9093673 tttctatatcaaaagataaaataaagttaaattgttttcgtataagctataagctgttttcataagct 9093606  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 880 - 928
Target Start/End: Complemental strand, 24836316 - 24836267
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactat 928  Q
    |||||||||||||||||||| |||||| ||||||||||| ||||||||||    
T  24836316 tttctataacaaaagataaaataaagtcaaattgttttcgtataaactat 24836267  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 880 - 944
Target Start/End: Complemental strand, 29274346 - 29274281
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataag 944  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||| |||| | ||| |||||||||    
T  29274346 tttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcataag 29274281  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 880 - 947
Target Start/End: Original strand, 1402949 - 1403017
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagcta 947  Q
    |||||||||||||||||||| |||||||||| | ||||||||||| |||| |  || ||||||||||||    
T  1402949 tttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcataagcta 1403017  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 881 - 947
Target Start/End: Complemental strand, 11340741 - 11340674
Alignment:
Q  881 ttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagcta 947  Q
    ||||||||||||||||||| ||||||||| || ||||||||||  |||| |  |||||||||||||||    
T  11340741 ttctataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcataagcta 11340674  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 883 - 947
Target Start/End: Complemental strand, 281962 - 281897
Alignment:
Q  883 ctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagcta 947  Q
    ||||||||||||||||| |||||| || |||||||||||||| |||| | |||  |||||||||||    
T  281962 ctataacaaaagataaaataaagtcaacttgttttcatataagctataagctgtgttcataagcta 281897  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 876 - 916
Target Start/End: Complemental strand, 28621231 - 28621190
Alignment:
Q  876 attgtttctataacaaaagataaa-taaagttaaattgtttt 916  Q
    ||||||| |||||||||||||||| |||||||||||||||||    
T  28621231 attgtttttataacaaaagataaaataaagttaaattgtttt 28621190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 928
Target Start/End: Complemental strand, 30537063 - 30537014
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactat 928  Q
    |||||||||||||||||||| |||| |||| |||||||||||||| ||||    
T  30537063 tttctataacaaaagataaaataaaattaatttgttttcatataatctat 30537014  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 880 - 928
Target Start/End: Original strand, 27529 - 27578
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactat 928  Q
    ||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  27529 tttctataacagaagataaaataaagtcaaattgttttcatataaactat 27578  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 880 - 944
Target Start/End: Original strand, 8130127 - 8130192
Alignment:
Q  880 tttctataacaaaagataa-ataaagttaaattgttttcatataaactatgacctggtttcataag 944  Q
    ||||||||||||||||||| ||||||| ||||| ||||||||||| |||| | ||| |||||||||    
T  8130127 tttctataacaaaagataacataaagtcaaattattttcatataagctataaactgttttcataag 8130192  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 880 - 928
Target Start/End: Original strand, 30024653 - 30024702
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactat 928  Q
    |||||||||||||||||||| |||||| ||||||||||||||||| ||||    
T  30024653 tttctataacaaaagataaaataaagtaaaattgttttcatataagctat 30024702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 880 - 928
Target Start/End: Complemental strand, 30338709 - 30338660
Alignment:
Q  880 tttctataacaaaagata-aataaagttaaattgttttcatataaactat 928  Q
    |||||||||||||||||| |||||||||||| ||||||||||||| ||||    
T  30338709 tttctataacaaaagatagaataaagttaaactgttttcatataagctat 30338660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 808 - 857
Target Start/End: Complemental strand, 37636403 - 37636354
Alignment:
Q  808 tttaggttctatttggataaatagtataattaagcacttacagcataagt 857  Q
    ||||||| |||||||||||||| || |||||||||||||| |||||||||    
T  37636403 tttaggtcctatttggataaatggtttaattaagcacttatagcataagt 37636354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 878 - 917
Target Start/End: Complemental strand, 26520348 - 26520308
Alignment:
Q  878 tgtttctataacaaaagat-aaataaagttaaattgttttc 917  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  26520348 tgtttctataacaaaagatgaaataaagttaaattgttttc 26520308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 962
Target Start/End: Original strand, 49219092 - 49219175
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagctaccttaaagagcttat 962  Q
    |||||||||||||| ||||| |||||| ||||| ||||||||||| |||| |  || |||||||| ||| ||||||||| ||||    
T  49219092 tttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcataaactatcttaaagagattat 49219175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 880 - 945
Target Start/End: Original strand, 53626729 - 53626795
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagc 945  Q
    |||||||||||||||||||| |||| | ||| ||||||||||||| |||| | ||| ||||||||||    
T  53626729 tttctataacaaaagataaaataaattcaaaatgttttcatataagctataagctgttttcataagc 53626795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 928
Target Start/End: Original strand, 4071835 - 4071884
Alignment:
Q  880 tttctataacaaaagat-aaataaagttaaattgttttcatataaactat 928  Q
    ||||||||||||||||| ||||||||| ||||| ||||||||||| ||||    
T  4071835 tttctataacaaaagataaaataaagtcaaattattttcatataagctat 4071884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 928
Target Start/End: Original strand, 11389479 - 11389528
Alignment:
Q  880 tttctataacaaaagataaa-taaagttaaattgttttcatataaactat 928  Q
    ||||||||| |||||||||| |||||||||| |||||| |||||||||||    
T  11389479 tttctataaaaaaagataaagtaaagttaaactgttttaatataaactat 11389528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 916
Target Start/End: Original strand, 17884021 - 17884058
Alignment:
Q  880 tttctataacaaaagat-aaataaagttaaattgtttt 916  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  17884021 tttctataacaaaagataaaataaagttaaattgtttt 17884058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 881 - 962
Target Start/End: Complemental strand, 30207686 - 30207605
Alignment:
Q  881 ttctataacaaaagataaataaagttaaattgttttcatataaactatgacctggtttcataagctaccttaaagagcttat 962  Q
    ||||||||||||| |||||  || | ||| ||||||||||||| |||| |  || ||||||||||||||||| |||| ||||    
T  30207686 ttctataacaaaaaataaaataaatcaaactgttttcatataagctataagttgttttcataagctaccttagagagattat 30207605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 884 - 948
Target Start/End: Original strand, 40174520 - 40174585
Alignment:
Q  884 tataacaaaagataaat-aaagttaaattgttttcatataaactatgacctggtttcataagctac 948  Q
    |||| ||||| |||||| |||||||||||||||||||| || |||| | ||| |||||||||||||    
T  40174520 tatagcaaaaaataaattaaagttaaattgttttcataaaagctataagctgttttcataagctac 40174585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 928
Target Start/End: Complemental strand, 47119082 - 47119033
Alignment:
Q  880 tttctataacaaaagataaat-aaagttaaattgttttcatataaactat 928  Q
    |||||||| |||||||||||  ||||||||||||||||||||||| ||||    
T  47119082 tttctatatcaaaagataaaacaaagttaaattgttttcatataagctat 47119033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 884 - 956
Target Start/End: Original strand, 51630068 - 51630141
Alignment:
Q  884 tataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagctaccttaaaga 956  Q
    |||| ||||||||||| ||||||||||||||||| |||||| |||| | ||  |||||||||||| ||| ||||    
T  51630068 tatagcaaaagataaaataaagttaaattgttttgatataagctataagctattttcataagctatcttgaaga 51630141  T

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Target: scaffold0549 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 881 - 947
Target Start/End: Complemental strand, 1840 - 1773
Alignment:
Q  881 ttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagcta 947  Q
    ||||||||||||||||||| ||||||||| || ||||||||||  |||| |  |||||||||||||||    
T  1840 ttctataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcataagcta 1773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 881 - 947
Target Start/End: Complemental strand, 3930 - 3863
Alignment:
Q  881 ttctataacaaaagataaa-taaagttaaattgttttcatataaactatgacctggtttcataagcta 947  Q
    ||||||||||||||||||| ||||||||| || ||||||||||  |||| |  |||||||||||||||    
T  3930 ttctataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcataagcta 3863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 884 - 928
Target Start/End: Original strand, 51525 - 51570
Alignment:
Q  884 tataacaaaagataaa-taaagttaaattgttttcatataaactat 928  Q
    |||||||||| ||||| |||||||||||||||||||||| ||||||    
T  51525 tataacaaaatataaaataaagttaaattgttttcatatcaactat 51570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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