View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1729-Insertion-5 (Length: 78)

Name: NF1729-Insertion-5
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1729-Insertion-5
NF1729-Insertion-5
[»] chr4 (2 HSPs)
chr4 (10-78)||(40093613-40093681)
chr4 (10-57)||(5892416-5892463)
[»] chr1 (1 HSPs)
chr1 (17-74)||(17574357-17574414)
[»] chr3 (1 HSPs)
chr3 (31-75)||(10863197-10863241)
[»] chr6 (1 HSPs)
chr6 (31-75)||(5239354-5239398)


Alignment Details
Target: chr4 (Bit Score: 69; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-31
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 40093613 - 40093681
Alignment:
Q  10 tagtttgtttctagaataagtgacacaaatcagaaattgatttgttcttattaaatgtaattattttga 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40093613 tagtttgtttctagaataagtgacacaaatcagaaattgatttgttcttattaaatgtaattattttga 40093681  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 5892416 - 5892463
Alignment:
Q  10 tagtttgtttctag-aataagtgacacaaatcagaaattgatttgttct 57  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||    
T  5892416 tagtttgtttctagaaataag-gacacaaatcagaaattgatttgttct 5892463  T

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Target: chr1 (Bit Score: 38; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 17574357 - 17574414
Alignment:
Q  17 tttctagaataagtgacacaaatcagaaattgatttgttcttattaaatgtaattatt 74  Q
    |||||| |||| |||||||||||||||| |||||||||||  ||||||||||||||||    
T  17574357 tttctaaaataggtgacacaaatcagaatttgatttgttcgcattaaatgtaattatt 17574414  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 10863197 - 10863241
Alignment:
Q  31 gacacaaatcagaaattgatttgttcttattaaatgtaattattt 75  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||    
T  10863197 gacacaaatcataaattgatttgttctcattaaatgtaattattt 10863241  T

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Target: chr6 (Bit Score: 33; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 5239354 - 5239398
Alignment:
Q  31 gacacaaatcagaaattgatttgttcttattaaatgtaattattt 75  Q
    ||||||||||| |||||| |||||||| |||||||||||||||||    
T  5239354 gacacaaatcaaaaattggtttgttctcattaaatgtaattattt 5239398  T

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