View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1729-Insertion-6 (Length: 169)
Name: NF1729-Insertion-6
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1729-Insertion-6 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 9e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 9e-50
Query Start/End: Original strand, 58 - 169
Target Start/End: Complemental strand, 22259524 - 22259413
Alignment:
| Q |
58 |
ttttattttatttgatctaaaggtttataattagtcacttaatcctcatgtgacatgagaatctaaacttgctttctaaataataatatttcaactttcc |
157 |
Q |
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| T |
22259524 |
ttttattttatttgatctaaagatttataattagtcacttaatcctcatgtgacatgagaatctgaacttgctttctaaagaataatatttcaactttcc |
22259425 |
T |
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| Q |
158 |
taatttattccc |
169 |
Q |
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| T |
22259424 |
taatttattccc |
22259413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 22259600 - 22259545
Alignment:
| Q |
15 |
caaggtatcaaattaaattttaacatcaaatctcaaccttttattttattttattt |
70 |
Q |
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| T |
22259600 |
caaggtgtcaaattaaattttgacaccaaatctcaaccttttgttttattttattt |
22259545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 5531944 - 5531898
Alignment:
| Q |
59 |
tttattttatttgatctaaaggtttataattagtcacttaatcctca |
105 |
Q |
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| T |
5531944 |
tttattttatttcatctaaagatttataattaatcacctaatcctca |
5531898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 3e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 4899424 - 4899576
Alignment:
| Q |
7 |
aatgacaccaaggtatcaaattaaattttaacatcaaatctcaaccttttattttattttatttgatctaaaggtttataattagtcacttaatcctcat |
106 |
Q |
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| T |
4899424 |
aatgccaccaaggtgtcaaattaaattttgacaccaaatctcaaccttttattatattt-----gatccaaaggtttataattagtcacttaatcatcat |
4899518 |
T |
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| Q |
107 |
gtgacatgagaatctaaacttgctttctaaataataatatttcaactttcctaattta |
164 |
Q |
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| T |
4899519 |
gtgacatgaaaatttgcaattgccttctaaagaataatatctcaacttacctaattta |
4899576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 13387811 - 13387761
Alignment:
| Q |
9 |
tgacaccaaggtatcaaattaaattttaacatcaaatctcaaccttttattt |
60 |
Q |
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| T |
13387811 |
tgacaccaagatgtcaaattaa-ttttaacaccaaatctcaaccctttattt |
13387761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 4962379 - 4962437
Alignment:
| Q |
7 |
aatgacaccaaggtatcaaattaaattttaacatcaaatctcaaccttttattttattt |
65 |
Q |
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| T |
4962379 |
aatgacaccaaggtgtcaaattaaattttgacaccaaatctcaaccttttattatattt |
4962437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 39861695 - 39861657
Alignment:
| Q |
7 |
aatgacaccaaggtatcaaattaaattttaacatcaaatc |
46 |
Q |
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| T |
39861695 |
aatgacaccaaggtgtcaaattaaa-tttaacatcaaatc |
39861657 |
T |
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