View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1729-Insertion-8 (Length: 583)

Name: NF1729-Insertion-8
Description: NF1729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1729-Insertion-8
NF1729-Insertion-8
[»] chr1 (8 HSPs)
chr1 (7-490)||(51806377-51806846)
chr1 (347-467)||(24117065-24117185)
chr1 (347-411)||(18337529-18337593)
chr1 (343-391)||(23528710-23528758)
chr1 (348-411)||(16417368-16417431)
chr1 (225-312)||(42947851-42947938)
chr1 (222-256)||(43034333-43034367)
chr1 (347-391)||(12003187-12003231)
[»] chr4 (9 HSPs)
chr4 (348-454)||(18459672-18459778)
chr4 (347-454)||(10394568-10394675)
chr4 (374-467)||(7452504-7452597)
chr4 (339-435)||(610573-610669)
chr4 (370-467)||(4156844-4156940)
chr4 (229-272)||(37951637-37951680)
chr4 (339-400)||(5884466-5884527)
chr4 (372-453)||(46664331-46664412)
chr4 (347-403)||(24719575-24719631)
[»] chr8 (8 HSPs)
chr8 (503-583)||(29307962-29308042)
chr8 (347-401)||(15761456-15761510)
chr8 (339-404)||(17788320-17788385)
chr8 (351-430)||(26879169-26879250)
chr8 (343-400)||(1018280-1018337)
chr8 (406-467)||(16751932-16751992)
chr8 (351-392)||(32424394-32424435)
chr8 (347-391)||(3094280-3094324)
[»] scaffold0036 (1 HSPs)
scaffold0036 (347-467)||(37118-37237)
[»] chr2 (6 HSPs)
chr2 (343-453)||(5395613-5395723)
chr2 (505-579)||(32399687-32399760)
chr2 (357-453)||(8428210-8428306)
chr2 (348-403)||(31023282-31023337)
chr2 (407-467)||(19257479-19257539)
chr2 (503-535)||(44553235-44553267)
[»] scaffold0048 (1 HSPs)
scaffold0048 (347-467)||(61334-61454)
[»] chr7 (5 HSPs)
chr7 (340-411)||(4574563-4574634)
chr7 (339-374)||(4574521-4574556)
chr7 (341-391)||(44944872-44944922)
chr7 (350-467)||(21157725-21157842)
chr7 (351-411)||(26565635-26565695)
[»] chr6 (5 HSPs)
chr6 (343-406)||(4597163-4597226)
chr6 (347-454)||(4841883-4841990)
chr6 (354-464)||(12245174-12245284)
chr6 (339-375)||(1178799-1178835)
chr6 (503-535)||(19750169-19750201)
[»] chr3 (13 HSPs)
chr3 (398-453)||(3041189-3041244)
chr3 (406-453)||(22970725-22970772)
chr3 (357-411)||(28135790-28135844)
chr3 (347-403)||(10872961-10873017)
chr3 (226-273)||(39432734-39432781)
chr3 (343-389)||(17796431-17796477)
chr3 (343-389)||(19104871-19104917)
chr3 (505-551)||(33771592-33771638)
chr3 (413-453)||(15806482-15806522)
chr3 (347-403)||(15806521-15806577)
chr3 (418-454)||(17796605-17796641)
chr3 (418-454)||(19105045-19105081)
chr3 (349-453)||(26234879-26234983)
[»] chr5 (3 HSPs)
chr5 (394-452)||(15445849-15445907)
chr5 (372-441)||(13350037-13350106)
chr5 (406-467)||(4289918-4289979)
[»] scaffold0182 (1 HSPs)
scaffold0182 (406-464)||(24299-24357)
[»] scaffold0684 (1 HSPs)
scaffold0684 (406-467)||(5562-5623)


Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 490
Target Start/End: Complemental strand, 51806846 - 51806377
Alignment:
Q  7 acttttgtgatgctagaattctctaaattctctttggggtaaggtatgtactattgcaatcaacagattgccctactttcatatttactatctccaacgt 106  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  51806846 acttttgtgatgttagaattctctaaattctctttggggtaaggtatgtactattgcaatcaacagattgccctactttcatatttaccatctccaacat 51806747  T
Q  107 atatgactgaaattctagtgattttcattacttatt---attaataaatttattttgcttattttagttagttacaataataataataagcaaggctatt 203  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  51806746 atatgactgaaattctagtgattttcattacttattattattaataaatttattttgcttattttagttagttac---aataataataagcaaggctatt 51806650  T
Q  204 ctaaaatgagaaactcatcaattcactttatagagtaaagtgagtaatatcaagcgttgataaacaaataaatgattgtgattacgtgcacatgcacaac 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||| |||    
T  51806649 ctaaaatgagaaactcatcaattcactttatagagtaaagtgagtaatatcaaccgttgataaacaaataaatgattgtcattacgtgcaaatgcataac 51806550  T
Q  304 aaatcatggttataatattcattgt----tgtcaaaatc-ttactcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagta 398  Q
    ||||||||||||||||||||| |||    | |  |  || |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  51806549 aaatcatggttataatattcactgtccagtatttatgtctttactcatcttcaacgattcaaattcattgcagaatcccaaaataggcaaaatcctagta 51806450  T
Q  399 aaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggattttatgggattttgaagtatggagttaattataattataa 490  Q
    ||||||||||||||| |||                   |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51806449 aaatcacatcaaagttgca-------------------caaaattgcagggttttatgggattttgaagtatggagttaattataattataa 51806377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 347 - 467
Target Start/End: Original strand, 24117065 - 24117185
Alignment:
Q  347 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgca 446  Q
    ||||||||||||||||| ||   ||||||| |||| |  |||||| || |||||||||||||||||||||  |||||  ||||| || |||||||| |||    
T  24117065 cttcaacgattcaaatttatattagaatcccaaaacaaacaaaatccttgtaaaatcacatcaaagtcgcgaaaaatggtgaaacccgtgcaaaatcgca 24117164  T
Q  447 ggattttatgggattttgaag 467  Q
    ||||||||   ||||||||||    
T  24117165 ggattttaaatgattttgaag 24117185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 411
Target Start/End: Complemental strand, 18337593 - 18337529
Alignment:
Q  347 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaa 411  Q
    ||||||||| |||||| ||| |||||| || |||||||||||||| ||||||||||| |||||||    
T  18337593 cttcaacgactcaaatccatagcagaaccccaaaataggcaaaatcctagtaaaatcgcatcaaa 18337529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 23528710 - 23528758
Alignment:
Q  343 tcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaat 391  Q
    ||||||||||||| |||||| ||| | ||||||||||||||||||||||    
T  23528710 tcatcttcaacgactcaaatccatagtagaatcctaaaataggcaaaat 23528758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 411
Target Start/End: Original strand, 16417368 - 16417431
Alignment:
Q  348 ttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaa 411  Q
    |||||| ||||||||||||| || ||||| |||| || |||| ||||||||||||| |||||||    
T  16417368 ttcaactattcaaattcatttcaaaatcccaaaacagacaaagttctagtaaaatcgcatcaaa 16417431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 42947938 - 42947851
Alignment:
Q  225 ttcactttatagagtaaagtgagtaatatcaagcgttgataaacaaataaatgattgtgattacgtgcacatgcacaacaaatcatgg 312  Q
    |||| |||| ||||||||  |||||||||||| ||||||||||||||| |||| |||  ||||  |||| ||| | ||||||||||||    
T  42947938 ttcattttagagagtaaaacgagtaatatcaaccgttgataaacaaatcaatggttgatattatatgcaaatgtaaaacaaatcatgg 42947851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 256
Target Start/End: Original strand, 43034333 - 43034367
Alignment:
Q  222 caattcactttatagagtaaagtgagtaatatcaa 256  Q
    |||||||||||| ||||||||||||||||||||||    
T  43034333 caattcactttaaagagtaaagtgagtaatatcaa 43034367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 391
Target Start/End: Complemental strand, 12003231 - 12003187
Alignment:
Q  347 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaat 391  Q
    |||||||||||||||||||| ||| ||||| |||| |||||||||    
T  12003231 cttcaacgattcaaattcatagcaaaatcccaaaacaggcaaaat 12003187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 348 - 454
Target Start/End: Complemental strand, 18459778 - 18459672
Alignment:
Q  348 ttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcag 447  Q
    |||||||| |||||| ||| |||||||||||||||||||||||| |||||||||   ||||||| |||||||||||| |||||| ||| |||||||||||    
T  18459778 ttcaacgactcaaatccatagcagaatcctaaaataggcaaaatcctagtaaaagtccatcaaaatcgcacaaaatcgtgaaattcatacaaaattgcag 18459679  T
Q  448 gatttta 454  Q
    |||||||    
T  18459678 gatttta 18459672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 347 - 454
Target Start/End: Original strand, 10394568 - 10394675
Alignment:
Q  347 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgca 446  Q
    ||||||||| | |||||||| | |||||  |||||||||||| || || |||||||  ||| ||| |||||||||||||| |||||||| |||||| |||    
T  10394568 cttcaacgacttaaattcatagtagaattttaaaataggcaagatccttgtaaaattgcattaaaatcgcacaaaatcattaaatccattcaaaatcgca 10394667  T
Q  447 ggatttta 454  Q
    ||||||||    
T  10394668 ggatttta 10394675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 467
Target Start/End: Original strand, 7452504 - 7452597
Alignment:
Q  374 tcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggattttatgggattttgaag 467  Q
    |||||| ||||||||||| ||| ||||||| | || || |||||||||||| |||||| ||| ||||||||||||||||||  || ||||||||    
T  7452504 tcctaatataggcaaaatcctaataaaatcgcttctaaatcgcacaaaatcgtgaaatacatacaaaattgcaggattttaaagggttttgaag 7452597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 435
Target Start/End: Complemental strand, 610669 - 610573
Alignment:
Q  339 ttactcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccat 435  Q
    |||||| | |||||||||| ||||| ||||||||||  ||||| || |||||| ||| | ||| | ||||||| |||||||||||| ||||||||||    
T  610669 ttactcgttttcaacgattgaaatttattgcagaattttaaaacagacaaaatcctaatgaaaccgcatcaaaatcgcacaaaatcgtgaaatccat 610573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 370 - 467
Target Start/End: Original strand, 4156844 - 4156940
Alignment:
Q  370 agaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggattttatgggattttgaag 467  Q
    |||||||||||||| |||||||  |||||||||| ||||||| || ||| ||||  |||||| ||| |||||| ||| |||||||  |||||||||||    
T  4156844 agaatcctaaaataagcaaaatcttagtaaaatcgcatcaaaatcacac-aaattgtgaaatacatacaaaatcgcaagattttaaaggattttgaag 4156940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 37951680 - 37951637
Alignment:
Q  229 ctttatagagtaaagtgagtaatatcaagcgttgataaacaaat 272  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||    
T  37951680 ctttagagagtaaagtgagtaatatcaactgttgataaacaaat 37951637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 400
Target Start/End: Complemental strand, 5884527 - 5884466
Alignment:
Q  339 ttactcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaa 400  Q
    ||||||| ||||| |||| ||||| ||||||| |||   |||||||||||||||||||||||    
T  5884527 ttactcaccttcatcgatccaaatccattgcaaaatgtaaaaataggcaaaattctagtaaa 5884466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 453
Target Start/End: Complemental strand, 46664412 - 46664331
Alignment:
Q  372 aatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggatttt 453  Q
    ||||| |||| ||||| ||| ||||||||||| ||||||| || ||||||||| | |||||||| |||| ||  ||||||||    
T  46664412 aatcccaaaacaggcataatcctagtaaaatcgcatcaaaatcccacaaaatcctaaaatccatacaaatttaaaggatttt 46664331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 24719575 - 24719631
Alignment:
Q  347 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatc 403  Q
    ||||||||| |||||| ||| ||||||||||||||| ||  |||| |||||||||||    
T  24719575 cttcaacgactcaaatccatagcagaatcctaaaatgggtgaaatcctagtaaaatc 24719631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 503 - 583
Target Start/End: Original strand, 29307962 - 29308042
Alignment:
Q  503 ggaatgctatggtcaaactctctaacacactctcttaaccacactctctctgattgggccacatcatcctctttttaaaca 583  Q
    |||||| ||||||||||||||| || |||||| |||||||||||||||||| |||||||||  ||||||||||||||||||    
T  29307962 ggaatgttatggtcaaactctcaaatacactcccttaaccacactctctctaattgggccatgtcatcctctttttaaaca 29308042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 15761510 - 15761456
Alignment:
Q  347 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaa 401  Q
    ||||||||| |||||||||| ||| ||||| ||||||||||||||||||||||||    
T  15761510 cttcaacgactcaaattcatagcaaaatcccaaaataggcaaaattctagtaaaa 15761456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 339 - 404
Target Start/End: Complemental strand, 17788385 - 17788320
Alignment:
Q  339 ttactcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatca 404  Q
    ||||||| ||||||  |||||||||||||||  |||  ||||||||||||||| ||||||||||||    
T  17788385 ttactcaccttcaaatattcaaattcattgcgaaattttaaaataggcaaaatcctagtaaaatca 17788320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 430
Target Start/End: Original strand, 26879169 - 26879250
Alignment:
Q  351 aacgattcaaattcattgcagaatcctaaaatagg--caaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaa 430  Q
    |||||||||||||||  ||| |||| ||||||| |  ||||| |||||||||||| ||||||| | |||||||||| |||||    
T  26879169 aacgattcaaattcacagcaaaatcttaaaatacgtgcaaaactctagtaaaatcgcatcaaaattgcacaaaatcgtgaaa 26879250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 1018337 - 1018280
Alignment:
Q  343 tcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaa 400  Q
    ||||||||||||||||||||||||| || ||| |||||  || |||| ||||||||||    
T  1018337 tcatcttcaacgattcaaattcattacaaaattctaaagcagacaaatttctagtaaa 1018280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 467
Target Start/End: Original strand, 16751932 - 16751992
Alignment:
Q  406 atcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggattttatgggattttgaag 467  Q
    |||||| |||||||||||| |||||||||| |||||| ||||||||||   |||||||||||    
T  16751932 atcaaaatcgcacaaaatc-tgaaatccattcaaaatcgcaggattttgatggattttgaag 16751992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 392
Target Start/End: Original strand, 32424394 - 32424435
Alignment:
Q  351 aacgattcaaattcattgcagaatcctaaaataggcaaaatt 392  Q
    |||||||||||||||| | ||||||||||||||| |||||||    
T  32424394 aacgattcaaattcatagtagaatcctaaaatagacaaaatt 32424435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 391
Target Start/End: Complemental strand, 3094324 - 3094280
Alignment:
Q  347 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaat 391  Q
    ||||||||| |||||| ||| | ||||||||||||||||||||||    
T  3094324 cttcaacgactcaaatccatagtagaatcctaaaataggcaaaat 3094280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 347 - 467
Target Start/End: Complemental strand, 37237 - 37118
Alignment:
Q  347 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgca 446  Q
    ||||||| | |||||| ||| |||||||| ||||||||| ||||| ||||||||||| ||||||| || ||||||||| ||||||| |||||||| ||||    
T  37237 cttcaacaactcaaatccatagcagaatcttaaaataggtaaaatcctagtaaaatcgcatcaaaatcacacaaaatcgtgaaatctatgcaaaa-tgca 37139  T
Q  447 ggattttatgggattttgaag 467  Q
     |||||||  || ||||||||    
T  37138 tgattttaaagggttttgaag 37118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 343 - 453
Target Start/End: Complemental strand, 5395723 - 5395613
Alignment:
Q  343 tcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaat 442  Q
    ||||||| || || |||||| ||| ||||||||  ||||||||||||||  ||||||||   ||||||| || |||||||||||||||| ||  ||||||    
T  5395723 tcatcttaaatgactcaaatccatagcagaatctcaaaataggcaaaatcttagtaaaaatgcatcaaaatctcacaaaatcatgaaattcaaacaaaat 5395624  T
Q  443 tgcaggatttt 453  Q
    |||||||||||    
T  5395623 tgcaggatttt 5395613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 505 - 579
Target Start/End: Original strand, 32399687 - 32399760
Alignment:
Q  505 aatgctatggtcaaactctctaacacactctcttaaccacactctctctgattgggccacatcatcctcttttta 579  Q
    |||||||| ||||||||||| ||||||||| |||  | |||||||||||||||||||||||||||| ||||||||    
T  32399687 aatgctatagtcaaactctcaaacacactcccttgtc-acactctctctgattgggccacatcatcatcttttta 32399760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 453
Target Start/End: Original strand, 8428210 - 8428306
Alignment:
Q  357 tcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggatttt 453  Q
    |||||||||| | |||||| |||||||||||||||  ||||||||||  |||||| ||  ||||||||  ||||| ||| |||||||| ||||||||    
T  8428210 tcaaattcataggagaatcttaaaataggcaaaatcttagtaaaatcgtatcaaaatcctacaaaatcccgaaattcatacaaaattgaaggatttt 8428306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 403
Target Start/End: Original strand, 31023282 - 31023337
Alignment:
Q  348 ttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatc 403  Q
    |||||||| |||||||||| | ||||||||||||||||||||||| || |||||||    
T  31023282 ttcaacgactcaaattcatagtagaatcctaaaataggcaaaattatattaaaatc 31023337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 19257539 - 19257479
Alignment:
Q  407 tcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggattttatgggattttgaag 467  Q
    ||||| |||||||||||  |||||||||| |||||| |||||||||||  | |||||||||    
T  19257539 tcaaaatcgcacaaaattgtgaaatccattcaaaatcgcaggattttaaagaattttgaag 19257479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 535
Target Start/End: Original strand, 44553235 - 44553267
Alignment:
Q  503 ggaatgctatggtcaaactctctaacacactct 535  Q
    ||||||||||||||| |||||||||||||||||    
T  44553235 ggaatgctatggtcacactctctaacacactct 44553267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 347 - 467
Target Start/End: Complemental strand, 61454 - 61334
Alignment:
Q  347 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgca 446  Q
    |||||||| ||||||| |||   ||||||| |||||| |||||||| |||||||||  ||||||| |||||||||| | |||||| ||| |||||  |||    
T  61454 cttcaacggttcaaatccatatgagaatcccaaaataagcaaaattatagtaaaattgcatcaaaatcgcacaaaaacgtgaaattcatacaaaaccgca 61355  T
Q  447 ggattttatgggattttgaag 467  Q
    ||||||||  || ||||||||    
T  61354 ggattttaatgggttttgaag 61334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 411
Target Start/End: Original strand, 4574563 - 4574634
Alignment:
Q  340 tactcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaa 411  Q
    |||||| |||||||||||||||||||||||||||| | |||||| ||||||| ||| ||||||  |||||||    
T  4574563 tactcaccttcaacgattcaaattcattgcagaattccaaaataagcaaaatcctactaaaattgcatcaaa 4574634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 374
Target Start/End: Original strand, 4574521 - 4574556
Alignment:
Q  339 ttactcatcttcaacgattcaaattcattgcagaat 374  Q
    ||||||| ||||||||||||||||||||||||||||    
T  4574521 ttactcaccttcaacgattcaaattcattgcagaat 4574556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 44944922 - 44944872
Alignment:
Q  341 actcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaat 391  Q
    ||||| |||||||||||||||| ||| | ||||||||||||||| ||||||    
T  44944922 actcaccttcaacgattcaaatccatagtagaatcctaaaatagtcaaaat 44944872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 467
Target Start/End: Complemental strand, 21157842 - 21157725
Alignment:
Q  350 caacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcagga 449  Q
    |||||| |||||| ||| ||| |||||||||| | | |||||  |||||||||| | | ||| | |||||||| | |||||| ||| |||||| |||| |    
T  21157842 caacgactcaaatccatagcaaaatcctaaaacaagaaaaatcgtagtaaaatcgcttaaaaattgcacaaaaccgtgaaattcatacaaaatcgcagaa 21157743  T
Q  450 ttttatgggattttgaag 467  Q
    |||||  |||||||||||    
T  21157742 ttttaaaggattttgaag 21157725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 26565695 - 26565635
Alignment:
Q  351 aacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaa 411  Q
    |||||||||||||||| ||||||||  |||||| |||| || ||| ||||||| |||||||    
T  26565695 aacgattcaaattcatagcagaatctcaaaatatgcaagatcctactaaaatcgcatcaaa 26565635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 406
Target Start/End: Complemental strand, 4597226 - 4597163
Alignment:
Q  343 tcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcaca 406  Q
    ||||||| ||||||||||||||||||||||||   |||||||||||||| ||||||||| ||||    
T  4597226 tcatctttaacgattcaaattcattgcagaatttaaaaataggcaaaatcctagtaaaaccaca 4597163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 454
Target Start/End: Complemental strand, 4841990 - 4841883
Alignment:
Q  347 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgca 446  Q
    ||||||||| |||||| | | ||||||||| | |||||||||||| ||||||||||| | ||||| |||||||||||| ||| || ||| ||| || |||    
T  4841990 cttcaacgactcaaatccgtagcagaatcccataataggcaaaatactagtaaaatcgcttcaaaatcgcacaaaatcgtgagattcatacaagatcgca 4841891  T
Q  447 ggatttta 454  Q
     |||||||    
T  4841890 tgatttta 4841883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 464
Target Start/End: Original strand, 12245174 - 12245284
Alignment:
Q  354 gattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggatttt 453  Q
    |||| |||| ||||||| ||||| |||| ||  ||||| |||| |||||  ||||||| ||| | |||||| |||||  |||||||||||| ||||||||    
T  12245174 gatttaaatccattgcaaaatcccaaaacagataaaatcctagaaaaatagcatcaaaatcgaataaaatcgtgaaacacatgcaaaattgaaggatttt 12245273  T
Q  454 atgggattttg 464  Q
    |  ||||||||    
T  12245274 acaggattttg 12245284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 1178799 - 1178835
Alignment:
Q  339 ttactcatcttcaacgattcaaattcattgcagaatc 375  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  1178799 ttactcaccttcaacgattcaaatccattgcagaatc 1178835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 535
Target Start/End: Complemental strand, 19750201 - 19750169
Alignment:
Q  503 ggaatgctatggtcaaactctctaacacactct 535  Q
    ||||||||||||||| |||||||||||||||||    
T  19750201 ggaatgctatggtcacactctctaacacactct 19750169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 453
Target Start/End: Original strand, 3041189 - 3041244
Alignment:
Q  398 aaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggatttt 453  Q
    ||||||| |||||| |||||||||||| |||||||||| |||||| ||||||||||    
T  3041189 aaaatcatatcaaaatcgcacaaaatcgtgaaatccattcaaaatcgcaggatttt 3041244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 453
Target Start/End: Original strand, 22970725 - 22970772
Alignment:
Q  406 atcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggatttt 453  Q
    |||||| ||||||||||||||||||||||| |||||| ||||||||||    
T  22970725 atcaaaatcgcacaaaatcatgaaatccattcaaaatcgcaggatttt 22970772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 411
Target Start/End: Original strand, 28135790 - 28135844
Alignment:
Q  357 tcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaa 411  Q
    |||||| ||| ||| ||| || |||||||||||||||||||||||||||||||||    
T  28135790 tcaaatccatagcaaaattctcaaataggcaaaattctagtaaaatcacatcaaa 28135844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 10873017 - 10872961
Alignment:
Q  347 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatc 403  Q
    ||||||||| |||||| ||| ||||||||  |||||||||||||| |||||||||||    
T  10873017 cttcaacgactcaaatccatagcagaatctcaaaataggcaaaatcctagtaaaatc 10872961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 39432734 - 39432781
Alignment:
Q  226 tcactttatagagtaaagtgagtaatatcaagcgttgataaacaaata 273  Q
    ||||| || |||||||||||||||||||||| |||||||||| |||||    
T  39432734 tcactgtagagagtaaagtgagtaatatcaaccgttgataaataaata 39432781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 17796431 - 17796477
Alignment:
Q  343 tcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaa 389  Q
    ||||||||||| | |||||||||| ||||||||||||||||| ||||    
T  17796431 tcatcttcaacaactcaaattcatagcagaatcctaaaatagacaaa 17796477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 19104871 - 19104917
Alignment:
Q  343 tcatcttcaacgattcaaattcattgcagaatcctaaaataggcaaa 389  Q
    ||||||||||| | |||||||||| ||||||||||||||||| ||||    
T  19104871 tcatcttcaacaactcaaattcatagcagaatcctaaaatagacaaa 19104917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 551
Target Start/End: Complemental strand, 33771638 - 33771592
Alignment:
Q  505 aatgctatggtcaaactctctaacacactctcttaaccacactctct 551  Q
    |||||||| | |||||||||||||||||||| |||| ||||||||||    
T  33771638 aatgctattgacaaactctctaacacactctattaaacacactctct 33771592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 453
Target Start/End: Complemental strand, 15806522 - 15806482
Alignment:
Q  413 tcgcacaaaatcatgaaatccatgcaaaattgcaggatttt 453  Q
    |||||||||||| |||||||||| |||||| ||||||||||    
T  15806522 tcgcacaaaatcgtgaaatccatacaaaatcgcaggatttt 15806482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 15806577 - 15806521
Alignment:
Q  347 cttcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatc 403  Q
    |||||| || |||||| ||| ||||||||| |||| ||||||||| |||||||||||    
T  15806577 cttcaatgactcaaatccatagcagaatcccaaaacaggcaaaatcctagtaaaatc 15806521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 17796605 - 17796641
Alignment:
Q  418 caaaatcatgaaatccatgcaaaattgcaggatttta 454  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  17796605 caaaatcgtgaaatccatacaaaattgcaggatttta 17796641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 19105045 - 19105081
Alignment:
Q  418 caaaatcatgaaatccatgcaaaattgcaggatttta 454  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  19105045 caaaatcgtgaaatccatacaaaattgcaggatttta 19105081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 453
Target Start/End: Original strand, 26234879 - 26234983
Alignment:
Q  349 tcaacgattcaaattcattgcagaatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcagg 448  Q
    ||||| ||| |||| ||| ||||||||  ||||||| ||||||  || ||||||   |||||| |||||||||||  | |||| |||||||||| |||||    
T  26234879 tcaacaatttaaatccatagcagaatctaaaaatagacaaaatcttaataaaattgtatcaaaatcgcacaaaattgtaaaattcatgcaaaatcgcagg 26234978  T
Q  449 atttt 453  Q
    |||||    
T  26234979 atttt 26234983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 452
Target Start/End: Original strand, 15445849 - 15445907
Alignment:
Q  394 tagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggattt 452  Q
    |||||||||  ||||||| ||||||||||||||||||| |||| |||||| ||||||||    
T  15445849 tagtaaaatagcatcaaaatcgcacaaaatcatgaaattcatgtaaaatttcaggattt 15445907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 372 - 441
Target Start/End: Complemental strand, 13350106 - 13350037
Alignment:
Q  372 aatcctaaaataggcaaaattctagtaaaatcacatcaaagtcgcacaaaatcatgaaatccatgcaaaa 441  Q
    ||||| |||| || ||||| |||||||||||||||||||| ||||||||| |  |||||||| |||||||    
T  13350106 aatccaaaaacagacaaaactctagtaaaatcacatcaaaatcgcacaaagttgtgaaatccttgcaaaa 13350037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 467
Target Start/End: Original strand, 4289918 - 4289979
Alignment:
Q  406 atcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggattttatgggattttgaag 467  Q
    |||||| |||||||||||| |||||||| | |||||| ||||||||||   |||||||||||    
T  4289918 atcaaaatcgcacaaaatcgtgaaatccgttcaaaatcgcaggattttgatggattttgaag 4289979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 464
Target Start/End: Original strand, 24299 - 24357
Alignment:
Q  406 atcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggattttatgggattttg 464  Q
    |||||| |||||||||||| |||||||||| ||||||  ||||||||||  ||||||||    
T  24299 atcaaaatcgcacaaaatcgtgaaatccattcaaaatcacaggattttaatggattttg 24357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 467
Target Start/End: Complemental strand, 5623 - 5562
Alignment:
Q  406 atcaaagtcgcacaaaatcatgaaatccatgcaaaattgcaggattttatgggattttgaag 467  Q
    |||||| |||||||||||| | |||||| | |||||||| |||||||||  |||||||||||    
T  5623 atcaaaatcgcacaaaatcgtaaaatccgttcaaaattgtaggattttaaaggattttgaag 5562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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