View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17290_high_1 (Length: 577)
Name: NF17290_high_1
Description: NF17290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17290_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 307 - 569
Target Start/End: Original strand, 53053348 - 53053610
Alignment:
| Q |
307 |
gcataagctagctcaagttagtgccatattaactaactataaataactgtgttgcaaacaacaattgtagcaacaaaacagaacattcattagcaatgga |
406 |
Q |
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| T |
53053348 |
gcataagctagctcaagttagtgccatattaactaactataaataactgtgttgcaaacaacaattgtagcaacaaaacagaacattcattagcaatgga |
53053447 |
T |
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| Q |
407 |
agctccaagctttgtcttcttgtcattgcttcttctcctcacagctactacaagctcagctcaactcactcgtggtttctataacaatgtatgccccaat |
506 |
Q |
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| T |
53053448 |
agctccaagctttgtcttcttgtcattgcttcttctcctcacagctactacaagctcagctcaactcactcgtggtttctataacaatgtatgccccaat |
53053547 |
T |
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| Q |
507 |
gtcgaacaattggttcgttctgccgtgaatcagaagtttcaacaaacatttgtctctgctcct |
569 |
Q |
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| T |
53053548 |
gtcgaacaattggttcgttctgccgtgaatcagaagtttcaacaaacatttgtcactgctcct |
53053610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 247
Target Start/End: Original strand, 53053062 - 53053288
Alignment:
| Q |
21 |
cacgcaatatactatgttactctaataagtcttcaaatttt-aaagtctttttggtactttgtcaatattgtatccccaatcatcctttagtccataaca |
119 |
Q |
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| T |
53053062 |
cacgcaatatactatgttactctaata-gtcttcaaatttttaaagtctttttggtactttgtcaatattgtaaccccaatcatcctttagtccataaca |
53053160 |
T |
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| Q |
120 |
taacaatattacacatactcttaaataaaaattatatcactctagccagactgtccatgtaacagacttttgttttgattctcatcaatcaattattctt |
219 |
Q |
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| T |
53053161 |
tagcaatatgacacatactcttaaataaaaattatatcactctagccagactgtccatgtaacagactttcgttttgattctcatcaatcaattattctt |
53053260 |
T |
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| Q |
220 |
caatcatgccccttcaaaagtgtaaccc |
247 |
Q |
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| T |
53053261 |
taatcatgccccttcaaaagtgtaaccc |
53053288 |
T |
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