View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17290_high_12 (Length: 240)
Name: NF17290_high_12
Description: NF17290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17290_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 37725722 - 37725941
Alignment:
| Q |
1 |
aatatccaatgatgtcgcaatcatgtacttttctcctctcttttttgtgttgaaatagcttctcttacat---acctttctctaattctctcaaccaaaa |
97 |
Q |
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| T |
37725722 |
aatatccaatgacgtcgcaatcatgtacttttctcctctcttttttgtgttgaaatagcttctcacacataccacctttctctaattctctcaac----- |
37725816 |
T |
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| Q |
98 |
caaacactaactggccgaatcctttatctttggttattttgaaccaaagtcgctgttnnnnnnnnncgccaacaaaattcatgcgatcaaatttccgtac |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
37725817 |
caaacactaactggccgaatcctttatctttggttattttgaaccaaagtcgctgttaaaaaagaacgccaacaaaattcatgcgattaaatttccg--a |
37725914 |
T |
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| Q |
198 |
acatttgatttccaaataattgaatta |
224 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
37725915 |
acatttgatttccaaagaattgaatta |
37725941 |
T |
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