View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17290_high_3 (Length: 545)
Name: NF17290_high_3
Description: NF17290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17290_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 38313971 - 38314165
Alignment:
| Q |
14 |
caaaggcacaactcaatccaacgggaaaagccatagtgactgtgaaaatcaggaggaggaagtaattgagagggtgcttgttgtgataatagtaaagtgg |
113 |
Q |
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| T |
38313971 |
caaaggcacaactcaatccaacgggaaaagccatagtgactgtgaaaatcaggaggaggaagtaattgagagggtgcttgttgtgataatagtaaagtgg |
38314070 |
T |
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| Q |
114 |
acataatgctgcaaaattaaacaaataagagtgttacaaaatacaatcacataaacaatagaccaaatacctattgtggtcctttaaattagata |
208 |
Q |
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| T |
38314071 |
acataatgctgcaaaattaaacaaataagagtgttacaaaatacaatcacataaacaatagaccaaatacctattgtggtcctttaaattagata |
38314165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 377 - 492
Target Start/End: Original strand, 38314424 - 38314539
Alignment:
| Q |
377 |
tctatgaaccctaattttgagaactgtggatttggacatacgacaatttgaattaaattcgatgaaaataggataagcatatgttatgacttaaacacca |
476 |
Q |
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| T |
38314424 |
tctatgaaccctaattttgagaactgtgaatttggacatacgacaatttgaattaaattcgatgaaaataggataagcatatgttatgacttaaacacca |
38314523 |
T |
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| Q |
477 |
attagtcaaaacaact |
492 |
Q |
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| T |
38314524 |
attagtcaaaacaact |
38314539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 291 - 380
Target Start/End: Original strand, 38314248 - 38314337
Alignment:
| Q |
291 |
gctaacttcgttaaaagtatctagaaccattgaaggtagtgtgttcaaaagtgcttataacatcaaacattatttttgaattcaaatcta |
380 |
Q |
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| T |
38314248 |
gctaacttcgttaaaagtatctagaaccattgaaggttgtgtgttcaaaagtgcttataacatcaaacattgtttttgaattcaaatcta |
38314337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 38276119 - 38276204
Alignment:
| Q |
55 |
gtgaaaatcaggaggaggaagtaattgagagggtgcttgttgtgataatagtaaagtggacataatgctgcaaaattaaacaaata |
140 |
Q |
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| T |
38276119 |
gtgaaaattaggaggaggaagtgattaagagggtgcttgttatgataccagtatagtggacataaaactgcaaaatgaaacaaata |
38276204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 38272406 - 38272491
Alignment:
| Q |
55 |
gtgaaaatcaggaggaggaagtaattgagagggtgcttgttgtgataatagtaaagtggacataatgctgcaaaattaaacaaata |
140 |
Q |
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| T |
38272406 |
gtgaaaattaggaggaggaaataattgagagggtgcttgtgatgataagcatatagtggacatgatgctgcaaaatagaacaaata |
38272491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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