View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17290_high_4 (Length: 382)
Name: NF17290_high_4
Description: NF17290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17290_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 4 - 366
Target Start/End: Original strand, 40943739 - 40944102
Alignment:
| Q |
4 |
agaggagtagcaaaggggaagtagacaaagaaacggttatagggtcaaaggagaaaatctgaagcaaagcaggacaagaatttccacgcttggaccttcc |
103 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40943739 |
agaggaataccaaaggggaagtagacaaagaaacggttatagggtcaaaggagaaaatctgaagcaaagcaggacaagaatttccacgcttggaccttcc |
40943838 |
T |
|
| Q |
104 |
aagaacaactaggttgagattttcgggtctccgaatccatgacccgcaagtaaccggaccctgaggtgacccagcatcattctccatccaaattctcaga |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40943839 |
aagaacaactaggttgagattttcgggtctccgaatccatgacccgcaagtaaccggaccctgaggtgacccagcatcattctccatccaaattctcaga |
40943938 |
T |
|
| Q |
204 |
aatttgaaatatggattcaaagtttgcttcttttttcaattgggtcactg-aaatcaagggnnnnnnnnatgaaaatcgttgattggaatttcgtctgta |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40943939 |
aatttgaaatatggattcaaagtttgcttcttttttcaattgggtcactgaaaatcaagggttttttttatgaaaatcgttgattggaatttcgtctgta |
40944038 |
T |
|
| Q |
303 |
aaatgcaatgttatatagaaatatccgaagaggaaagagagggtcaatagcacaagttgttgtt |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40944039 |
gaatgcaatgttatatagaaatatccgaagaggaaagagagggtcactagcacaagttgttgtt |
40944102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University