View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17290_high_6 (Length: 322)
Name: NF17290_high_6
Description: NF17290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17290_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 3814294 - 3814002
Alignment:
| Q |
14 |
aggtggaataaggttcacaatcaatggtcattcttacttcaatttagtccttgtgactaatgttggaggtgctggtgatgtgcattctgtagccatcaaa |
113 |
Q |
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| T |
3814294 |
aggtggaataaggttcacaatcaatggtcattcttacttcaatttagtccttgtgactaatgttggaggcgctggtgatgtgcattctgtagcaattaaa |
3814195 |
T |
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| Q |
114 |
ggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaaagtctttcatttgtagtcacca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3814194 |
ggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaaagtctttcatttgtagtcacca |
3814095 |
T |
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| Q |
214 |
ccggtaatggtcatagtattgtgtcatttaatgttgccccacccagttggtcctttggacaaacctacactggaaggcagttcctctactaac |
306 |
Q |
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| T |
3814094 |
ctggtaatggtcatagtattgtgtcatttaatgttgccccacccagttggtcctttggacaaacctacactggaaggcagttcctctactaac |
3814002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 3803625 - 3803333
Alignment:
| Q |
14 |
aggtggaataaggttcacaatcaatggtcattcttacttcaatttagtccttgtgactaatgttggaggtgctggtgatgtgcattctgtagccatcaaa |
113 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
3803625 |
aggtggcataaggttcacaatcaatggtcattcttacttcaatttaatccttgtgactaatgttggaggtgcaggtgatgtgcattctgtagcaatcaaa |
3803526 |
T |
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| Q |
114 |
ggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaaagtctttcatttgtagtcacca |
213 |
Q |
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| T |
3803525 |
ggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaaagtctttcatttgtagtcacca |
3803426 |
T |
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| Q |
214 |
ccggtaatggtcatagtattgtgtcatttaatgttgccccacccagttggtcctttggacaaacctacactggaaggcagttcctctactaac |
306 |
Q |
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| T |
3803425 |
ctggtaatggtcatagtattgtgtcatttaatgttgccccacccagttggtcctttggacaaacctacactggaaggcagttcctctactaac |
3803333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 2866387 - 2866109
Alignment:
| Q |
18 |
ggaataaggttcacaatcaatggtcattcttacttcaatttagtccttgtgactaatgttggaggtgctggtgatgtgcattctgtagccatcaaaggtt |
117 |
Q |
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||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
2866387 |
ggaattagattcaccatcaatggtcattcttacttcaatttagtccttgtcactaatgttggaggtgctggtgatgtacattctgtggccatcaaaggtt |
2866288 |
T |
|
| Q |
118 |
caaggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaaagtctttcatttgtagtcaccaccgg |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||| || |||||||| | ||||||||||||||||| ||||| |||||||| | |
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| T |
2866287 |
caagatctagatggcaagccatgtcaaggaattgggggcaaaattggcaaagtaactcttaccttaatggacaaagtctttcctttgttgtcaccacaag |
2866188 |
T |
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| Q |
218 |
taatggtcatagtattgtgtcatttaatgttgccccacccagttggtcctttggacaaacctacactggaaggcagttc |
296 |
Q |
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||||||||| ||| | || ||||| |||| ||| || | ||||||||||||| || ||||||||||||||||||||| |
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| T |
2866187 |
taatggtcacagtgtggtttcattcaatgctgctcctgctggttggtcctttggtcagacctacactggaaggcagttc |
2866109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 27476976 - 27476807
Alignment:
| Q |
22 |
taaggttcacaatcaatggtcattcttacttcaatttagtccttgtgactaatgttggaggtgctggtgatgtgcattctgtagccatcaaaggttcaag |
121 |
Q |
| |
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||||||||||||| ||||| || ||||||||||| |||| | || || ||||| || |||||||| ||||| |||||| || |||||||||| ||||| |
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| T |
27476976 |
taaggttcacaataaatggccactcttacttcaacctagttttggtcaccaatgtaggtggtgctggggatgttcattctatatccatcaaagggtcaag |
27476877 |
T |
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| Q |
122 |
gactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaa |
191 |
Q |
| |
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||| | |||||| | |||||||| |||||||| ||||||||||| |||||||||||| | ||||||||| |
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| T |
27476876 |
aactggttggcaaccaatgtcaagaaattggggccaaaattggcaaagcaactcttatcttaatggacaa |
27476807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 27488234 - 27488065
Alignment:
| Q |
22 |
taaggttcacaatcaatggtcattcttacttcaatttagtccttgtgactaatgttggaggtgctggtgatgtgcattctgtagccatcaaaggttcaag |
121 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||| |||| | || || ||||| || || ||||| ||||| |||||| || |||||||||| ||||| |
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| T |
27488234 |
taaggttcacaataaatggccactcttacttcaacctagttttggtcaccaatgtaggtggagctggggatgttcattctatatccatcaaagggtcaag |
27488135 |
T |
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| Q |
122 |
gactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaa |
191 |
Q |
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||| |||||||| | |||||||| |||||||| ||||||||||| |||||||||||| | ||||||||| |
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| T |
27488134 |
aactggatggcaaccaatgtcaagaaattggggtcaaaattggcaaagcaactcttatcttaatggacaa |
27488065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 18300671 - 18300568
Alignment:
| Q |
18 |
ggaataaggttcacaatcaatggtcattcttacttcaatttagtccttgtgactaatgttggaggtgctggtgatgtgcattctgtagccatcaaaggtt |
117 |
Q |
| |
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||||| ||||||||||||||||| |||||||||||||| || || || || || ||||| || |||||||||||||| ||||| ||||| || ||||| | |
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| T |
18300671 |
ggaattaggttcacaatcaatggacattcttacttcaacttggttctagtaacaaatgtgggtggtgctggtgatgtacattcagtagctattaaaggat |
18300572 |
T |
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| Q |
118 |
caag |
121 |
Q |
| |
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|||| |
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| T |
18300571 |
caag |
18300568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 31999546 - 31999476
Alignment:
| Q |
123 |
actagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaaag |
193 |
Q |
| |
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||||| |||||| |||||||||| |||||||| ||||| ||||||||||| || || | ||||||||||| |
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| T |
31999546 |
actagctggcaacccatgtcaagaaattggggccaaaactggcagagcaattcctaccttaatggacaaag |
31999476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 31999651 - 31999614
Alignment:
| Q |
18 |
ggaataaggttcacaatcaatggtcattcttacttcaa |
55 |
Q |
| |
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||||||||||||||||||||||| || ||||||||||| |
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| T |
31999651 |
ggaataaggttcacaatcaatggccactcttacttcaa |
31999614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 31831553 - 31831380
Alignment:
| Q |
21 |
ataaggttcacaatcaatggtcattcttacttcaatttagtccttgtgactaatgttggaggtgctggtgatgtgcattctgtagccatcaaaggttcaa |
120 |
Q |
| |
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||||||||||| |||||||| |||||||| || || |||| ||| | || |||||||| |||||||| ||||| ||| ||| | |||||||||| |||| |
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| T |
31831553 |
ataaggttcactatcaatggacattcttattttaacctagttcttatcacaaatgttggtggtgctggagatgtacatgctgcatccatcaaagggtcaa |
31831454 |
T |
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| Q |
121 |
ggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaaagt |
194 |
Q |
| |
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||| | ||| | | |||||||| || ||||||||||| |||||||||||| |||| | ||||| |||||| |
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| T |
31831453 |
aaactggttggatatctatgtcaagaaactggggacaaaactggcagagcaacaattatctcaatggtcaaagt |
31831380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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