View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17290_high_8 (Length: 266)

Name: NF17290_high_8
Description: NF17290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17290_high_8
NF17290_high_8
[»] chr8 (5 HSPs)
chr8 (8-263)||(9773807-9774062)
chr8 (19-107)||(2268555-2268641)
chr8 (15-105)||(5064204-5064292)
chr8 (17-105)||(21693141-21693227)
chr8 (17-107)||(38657174-38657263)
[»] chr6 (4 HSPs)
chr6 (17-263)||(20383213-20383458)
chr6 (17-256)||(14759603-14759843)
chr6 (15-95)||(1051148-1051227)
chr6 (17-95)||(18765618-18765694)
[»] chr2 (2 HSPs)
chr2 (17-263)||(13497607-13497853)
chr2 (17-96)||(13031971-13032046)
[»] chr4 (3 HSPs)
chr4 (17-241)||(28588702-28588923)
chr4 (12-108)||(8847780-8847874)
chr4 (16-44)||(25269105-25269133)
[»] chr7 (6 HSPs)
chr7 (17-187)||(2769069-2769234)
chr7 (16-108)||(29865135-29865225)
chr7 (17-108)||(27954010-27954099)
chr7 (16-108)||(27950847-27950937)
chr7 (17-95)||(5222283-5222359)
chr7 (17-95)||(43364178-43364254)
[»] chr3 (4 HSPs)
chr3 (22-263)||(23431064-23431299)
chr3 (17-95)||(4501048-4501124)
chr3 (15-91)||(27900455-27900529)
chr3 (98-210)||(23391599-23391710)
[»] chr5 (3 HSPs)
chr5 (17-258)||(17346210-17346447)
chr5 (17-93)||(4694431-4694505)
chr5 (29-93)||(42747073-42747135)
[»] scaffold0059 (1 HSPs)
scaffold0059 (18-179)||(5553-5711)
[»] scaffold0013 (1 HSPs)
scaffold0013 (18-97)||(239770-239848)
[»] chr1 (2 HSPs)
chr1 (16-108)||(19329303-19329392)
chr1 (69-114)||(45620344-45620388)
[»] scaffold0426 (1 HSPs)
scaffold0426 (200-263)||(2343-2404)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 263
Target Start/End: Original strand, 9773807 - 9774062
Alignment:
Q  8 tgagatgaatgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttct 107  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  9773807 tgagatgaatgatgtagtatcaaaagtaagtatgttttagtatcgtttccacaaggattagtgcgatattcgtaagccattcaacaattgttatcgttct 9773906  T
Q  108 atgttaagggtttgtaaaatggtttgttttgaaaacctaatcgggctataatgcagtaaataaaactgagttaaacagaggattaaaactaatgggatta 207  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    ||| ||    
T  9773907 atgttaagggtttgtaaaatggtttgtttcgaaaacctaatcggactataatgcagtaaataaaactgagttaaacagaggattaaaactgccaggagta 9774006  T
Q  208 gacaattcattaaccaaacgtcgcatatattctcttgatcaagcatatagattcta 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9774007 gacaattcattaaccaaacgtcgcatatattctcttgatcaagcatatagattcta 9774062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 2268641 - 2268555
Alignment:
Q  19 atgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttct 107  Q
    |||||||||||||||||||||| ||||  |||||| | || | ||||||||||||||||| |||||||||||||||| | |||||||||    
T  2268641 atgtagtatcaaaagtaagtat-ttttgttatcgtctccatagggactagtgcgatattc-taagccgttcaacaatcggtatcgttct 2268555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 5064292 - 5064204
Alignment:
Q  15 aatgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgtt 105  Q
    ||||||||| |||||||||||||||| ||||  |||||| |||| | ||| | ||||||||||| |||||||||||||||| | |||||||    
T  5064292 aatgatgtaatatcaaaagtaagtat-ttttgttatcgtcttcacagggattggtgcgatattc-taagccgttcaacaatcggtatcgtt 5064204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 21693227 - 21693141
Alignment:
Q  17 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgtt 105  Q
    ||||||| |||||||||||||||| |||   |||||| | || ||||||||| |||| ||||  ||||||||||||||| |||||||||    
T  21693227 tgatgtaatatcaaaagtaagtatttttgtgtatcgtctccacaaggactagcgcgacattc--aagccgttcaacaatcgttatcgtt 21693141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 38657174 - 38657263
Alignment:
Q  17 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttct 107  Q
    ||||||||||| |||||||||||| ||||  ||| || |||| | | ||| ||||||||||| |||||||||||| ||| | |||||||||    
T  38657174 tgatgtagtattaaaagtaagtat-ttttgttattgtcttcataggaactggtgcgatattcttaagccgttcaataatcggtatcgttct 38657263  T

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Target: chr6 (Bit Score: 129; Significance: 8e-67; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 20383458 - 20383213
Alignment:
Q  17 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttctatgttaagg 116  Q
    ||||||||| |||||||||||||||||||| |||| |||||||| ||||| ||| |||||||||||| |||||||||||||||||||||||| |||||||    
T  20383458 tgatgtagtgtcaaaagtaagtatgttttagtatctttttcaaagggactggtgtgatattcgtaagtcgttcaacaattgttatcgttctaagttaagg 20383359  T
Q  117 gtttgtaaaatggtttgtttt-gaaaacctaatcgggctataatgcagtaaataaaactgagttaaacagaggattaaaactaatgggattagacaattc 215  Q
    ||||||||||| |||| ||||  ||||||||||| | ||| ||||| |||| ||||||||||||||||||||   ||||  |  |||||||||||  |||    
T  20383358 gtttgtaaaatagttttttttctaaaacctaatcagactaaaatgcggtaattaaaactgagttaaacagagagataaacttgttgggattagac--ttc 20383261  T
Q  216 attaaccaaacgtcgcatatattctcttgatcaagcatatagattcta 263  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  20383260 attaaccaaacgttgcatatattatcttgatcaagcatatagattcta 20383213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 14759843 - 14759603
Alignment:
Q  17 tgatgtagtatcaaaagtaagtatgttttact----atcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttctatgtt 112  Q
    ||||||||||||||||||| |||||||| | |    ||||||| || | |||||||| ||||||||||||||||||||||||| |||||||||||  |||    
T  14759843 tgatgtagtatcaaaagtatgtatgtttaattttatatcgtttccatagggactagtacgatattcgtaagccgttcaacaatggttatcgttcttagtt 14759744  T
Q  113 aagggtttgtaaaatggtttgttttgaaaacctaatcgggctataatgcagtaaataaaactgagttaaacagaggattaaaactaatgggattagacaa 212  Q
    ||||||||  ||||| |||||||  |||| ||||||||| ||||||||  |||||| ||||| ||||||||| ||   |||||||  |||||||||  |     
T  14759743 aagggttttgaaaattgtttgttgcgaaatcctaatcggactataatgaggtaaat-aaactaagttaaacaaagacgtaaaactgttgggattag--at 14759647  T
Q  213 ttcattaaccaaacgtcgcatatattctcttgatcaagcatata 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14759646 ttcattaaccaaacgtcgcatatattctcttgatcaagcatata 14759603  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 1051148 - 1051227
Alignment:
Q  15 aatgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaat 95  Q
    |||||||||||||||||||||||||| ||||  |||||| | || | ||||| ||||||||||| ||||||||||||||||    
T  1051148 aatgatgtagtatcaaaagtaagtattttttgttatcgtctccatagggactggtgcgatattc-taagccgttcaacaat 1051227  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 18765618 - 18765694
Alignment:
Q  17 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaat 95  Q
    |||||||||||||||||||||||| || |  |||||| | || | ||||||||||||||||| ||||||||||||||||    
T  18765618 tgatgtagtatcaaaagtaagtat-ttctgttatcgtctccatagggactagtgcgatattc-taagccgttcaacaat 18765694  T

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Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 13497607 - 13497853
Alignment:
Q  17 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgtt-atcgttctatgttaag 115  Q
    |||||||||||||||||||||||||| ||| |||| | |  | | ||||||||||||||||||||||||||||||||||| || |||||| || ||||||    
T  13497607 tgatgtagtatcaaaagtaagtatgtattagtatcatatctatagggactagtgcgatattcgtaagccgttcaacaattttttatcgttttaagttaag 13497706  T
Q  116 ggtttgtaaaatggtttgttttgaaaacctaatcgggctataatgc-agtaaataaaactgagttaaacagaggattaaaactaatgggattagacaatt 214  Q
    | |||||||||| |||||||  |||||||||||||| ||||||||| |  |||||||| ||||||| ||||||||||||| ||  |||| ||||||  ||    
T  13497707 gttttgtaaaattgtttgttgcgaaaacctaatcggactataatgcgataaaataaaattgagttagacagaggattaaagctgttggggttagac--tt 13497804  T
Q  215 cattaaccaaacgtcgcatatattctcttgatcaagcatatagattcta 263  Q
    ||||||  ||| ||||||||||||||||| |||||||||||||||||||    
T  13497805 cattaagaaaatgtcgcatatattctcttaatcaagcatatagattcta 13497853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 13032046 - 13031971
Alignment:
Q  17 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaatt 96  Q
    ||||||||||||| |||||||||  ||||  |||||| |||| || || ||||||||||||  |||||||||||||||||    
T  13032046 tgatgtagtatcataagtaagta--tttttgtatcgtcttcataaagattagtgcgatatt--taagccgttcaacaatt 13031971  T

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Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 28588702 - 28588923
Alignment:
Q  17 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttctatgttaagg 116  Q
    |||||||||||||| |||||||| |||||| ||||||||  | | ||| || |||||||||  ||||||||||||||||||||||||||||| |||| ||    
T  28588702 tgatgtagtatcaatagtaagtaagttttaatatcgtttctacagggattaatgcgatatta-taagccgttcaacaattgttatcgttctaagtta-gg 28588799  T
Q  117 gtttgtaaaatggtttgttttgaaaa-cctaatcgggctataatgcagtaaataaaactgagttaaacagaggattaaaactaatgggattagacaattc 215  Q
    |||| |||||| |||||||| ||||| ||||||||| ||||||||| |||||||||   |||||||||||||  ||||||||  |||||||||||  |||    
T  28588800 gtttttaaaattgtttgtttcgaaaaacctaatcggactataatgcggtaaataaactagagttaaacagagacttaaaactgctgggattagac--ttc 28588897  T
Q  216 attaaccaaacgtcgcatatattctc 241  Q
    | |||||||||||| |||||||||||    
T  28588898 actaaccaaacgtcacatatattctc 28588923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 8847780 - 8847874
Alignment:
Q  12 atgaatgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttcta 108  Q
    |||| |||||||||||||||||||||||| |||   |||||| | || ||||||||| |||||||||  ||||||||||||||| ||||||||||||    
T  8847780 atgactgatgtagtatcaaaagtaagtatttttgtgtatcgtctccacaaggactagcgcgatattc--aagccgttcaacaatcgttatcgttcta 8847874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 25269133 - 25269105
Alignment:
Q  16 atgatgtagtatcaaaagtaagtatgttt 44  Q
    |||||||||||||||||||||||||||||    
T  25269133 atgatgtagtatcaaaagtaagtatgttt 25269105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 2769069 - 2769234
Alignment:
Q  17 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttctatgttaagg 116  Q
    |||||||||||||||||||    | ||||| ||||||||  | | | ||||||| ||||||  ||||||||||||||||||||||||||||| |||||||    
T  2769069 tgatgtagtatcaaaagta----tattttagtatcgtttctacaggtactagtgtgatatta-taagccgttcaacaattgttatcgttctaagttaagg 2769163  T
Q  117 gtttgtaaaatggtttgttttgaaaacctaatcgggctataatgcagtaaataaaactgagttaaacagag 187  Q
    ||||||||||| |||||||  || ||| ||||||| | | ||||| ||||||||||   ||||||||||||    
T  2769164 gtttgtaaaattgtttgttgcgagaacttaatcggacaaaaatgcggtaaataaaataaagttaaacagag 2769234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 29865225 - 29865135
Alignment:
Q  16 atgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttcta 108  Q
    ||||||||||||||||||||||||| |||   |||||| | || | |||||||||||||||||  ||| ||||||||||| | ||||||||||    
T  29865225 atgatgtagtatcaaaagtaagtatttttgtgtatcgtctccacatggactagtgcgatattc--aagtcgttcaacaatcgatatcgttcta 29865135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 27954010 - 27954099
Alignment:
Q  17 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttcta 108  Q
    |||||||||||||||||||||||| |||   |||||| |  | | ||||||| |||||||||  ||||||||||||||| ||||||||||||    
T  27954010 tgatgtagtatcaaaagtaagtatttttgtgtatcgtctctagagggactagcgcgatattc--aagccgttcaacaatcgttatcgttcta 27954099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 27950847 - 27950937
Alignment:
Q  16 atgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttcta 108  Q
    ||||||||||||||||||||||||| |||   ||| |||| || |  |||||| |||||||||  ||||||||||| ||| ||||||||||||    
T  27950847 atgatgtagtatcaaaagtaagtatttttgtgtattgtttccacagagactagcgcgatattc--aagccgttcaataatcgttatcgttcta 27950937  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 5222283 - 5222359
Alignment:
Q  17 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaat 95  Q
    |||||||||||||||||||||||| ||||  |||||| | || | ||||| ||||||||||| |||||| |||||||||    
T  5222283 tgatgtagtatcaaaagtaagtat-ttttgttatcgtctccacagggactggtgcgatattc-taagccattcaacaat 5222359  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 43364178 - 43364254
Alignment:
Q  17 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaat 95  Q
    |||||||||||||||||||||||| || |  |||||| | || | ||||| ||||||||||| ||||||||||||||||    
T  43364178 tgatgtagtatcaaaagtaagtat-ttatgttatcgtctccacagggactggtgcgatattc-taagccgttcaacaat 43364254  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 263
Target Start/End: Complemental strand, 23431299 - 23431064
Alignment:
Q  22 tagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttctatgttaagggtttg 121  Q
    |||||| ||||||||||||  |||| |||||||| || | ||||||||||||||||  |||||| |||||||||  ||||| ||||| |||||||||||     
T  23431299 tagtataaaaagtaagtat--tttaatatcgtttccacatggactagtgcgatatta-taagccattcaacaatgattatcattctaagttaagggttta 23431203  T
Q  122 taaaatggtttgttttgaaaacctaatcgggctataatgcagtaaataaaactgag-ttaaacagaggattaaaactaatgggattagacaattcattaa 220  Q
    ||| ||  |||||| |||||| ||| | |  |||| |||| ||||||||||| ||| ||  ||||||   ||||| || |||||||||||  |||||| |    
T  23431202 taagattctttgttatgaaaa-ctatttgaactattatgcggtaaataaaac-gagattggacagagacataaaaatactgggattagac--ttcattga 23431107  T
Q  221 ccaaacgtcgcatatattctcttgatcaagcatatagattcta 263  Q
    |||||||||||||||||  || ||||||| |||||||||||||    
T  23431106 ccaaacgtcgcatatatcttcatgatcaaacatatagattcta 23431064  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 4501048 - 4501124
Alignment:
Q  17 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaat 95  Q
    |||||||||||||||||||||||| ||||  |||||| | || | ||||||||||||||||| ||||||||||||||||    
T  4501048 tgatgtagtatcaaaagtaagtat-ttttgttatcgtctccacatggactagtgcgatattc-taagccgttcaacaat 4501124  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 27900455 - 27900529
Alignment:
Q  15 aatgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaa 91  Q
    |||||||||||||||||||||||||| || |  |||||||| || | ||||| ||||||||||| ||||||||||||    
T  27900455 aatgatgtagtatcaaaagtaagtat-ttatgttatcgtttccacatggactggtgcgatattc-taagccgttcaa 27900529  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 23391710 - 23391599
Alignment:
Q  98 ttatcgttctatgttaagggtttgtaaaatggtttgttttgaaaacctaatcgggctataatgcagtaaataaaactgag-ttaaacagaggattaaaac 196  Q
    ||||| ||||||||||||||||| ||||||  |||||| |||||| ||| | |  ||||||||| ||||||||||| ||| ||| |||||| | ||||||    
T  23391710 ttatcattctatgttaagggtttataaaattatttgttatgaaaa-ctatttgaactataatgcggtaaataaaac-gagattagacagagaagtaaaac 23391613  T
Q  197 taatgggattagac 210  Q
    |  |||||||||||    
T  23391612 tgttgggattagac 23391599  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 17346210 - 17346447
Alignment:
Q  17 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttctatgttaagg 116  Q
    |||||||||||||||||||||||| ||||  |||| |||||| | ||||||||||||||||  ||||  |||||| |||| ||||||| ||| || | |     
T  17346210 tgatgtagtatcaaaagtaagtatatttttgtatcattttcatatggactagtgcgatattt-taagttgttcaataattattatcgtcctaagtgatga 17346308  T
Q  117 gtttgtaaaa-tggtttgttttgaaaacc-taatcgggctataatgcagtaaataaaactgagttaaacagaggattaaaactaatgggattagacaatt 214  Q
    |   ||| || | |||||||||| ||||| ||||||  ||||||||| |||| ||| |  |||||||||||||   |||||||  |||||||||||  ||    
T  17346309 g---gtataacttgtttgttttgtaaaccataatcgaactataatgcggtaattaagatagagttaaacagagatataaaactgctgggattagac--tt 17346403  T
Q  215 cattaaccaaacgtcgcatatattctcttgatcaagcatataga 258  Q
    |||||| ||||| ||||| ||||||||||| |||| ||||||||    
T  17346404 cattaagcaaacctcgcacatattctcttggtcaatcatataga 17346447  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 4694505 - 4694431
Alignment:
Q  17 tgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaaca 93  Q
    |||||||||||||||||||||||| ||||  |||||| |||| ||||||| ||||||| ||| |||| |||||||||    
T  4694505 tgatgtagtatcaaaagtaagtat-ttttgttatcgtcttcacaaggactggtgcgattttc-taagtcgttcaaca 4694431  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 42747073 - 42747135
Alignment:
Q  29 aaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaaca 93  Q
    |||||||||||| ||||| ||||||||||| | |||||||||||||| || ||| ||||||||||    
T  42747073 aaaagtaagtat-ttttaatatcgttttcacacggactagtgcgata-tcataaaccgttcaaca 42747135  T

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Target: scaffold0059 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 5553 - 5711
Alignment:
Q  18 gatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttctatgttaaggg 117  Q
    |||||||||||||||||||||||  |||  |||| |||  ||| | ||||||||||||||  |||||||||||||||||| ||||||| || || | |||    
T  5553 gatgtagtatcaaaagtaagtataattttgtatcatttctaaacgaactagtgcgatatt--taagccgttcaacaattgatatcgttttaagtgatggg 5650  T
Q  118 tttgtaaaatggtttgttttgaaaacctaatcgggctataatgcagtaaataaaactgagtt 179  Q
    ||| | || | |||||||| ||||||||||| |  ||||| || | ||||||||| ||||||    
T  5651 tttat-aatttgtttgtttagaaaacctaatagaactatagtgaaataaataaaattgagtt 5711  T

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Target: scaffold0013 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 239848 - 239770
Alignment:
Q  18 gatgtagtatcaaaagtaagtatgttttactatcgttttcaaa-aggactagtgcgatattcgtaagccgttcaacaattg 97  Q
    |||||||||||||||||||||||  |||  |||||||||||||  |||||||||||||||||  |||||||||||||||||    
T  239848 gatgtagtatcaaaagtaagtataattttgtatcgttttcaaatgggactagtgcgatattc--aagccgttcaacaattg 239770  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 19329303 - 19329392
Alignment:
Q  16 atgatgtagtatcaaaagtaagtatgttttactatcgttttcaaaaggactagtgcgatattcgtaagccgttcaacaattgttatcgttcta 108  Q
    ||||||||||||||||||||||||| |||| ||||||| | || | ||||| |||||||||||  ||||||||||||||| | ||| ||||||    
T  19329303 atgatgtagtatcaaaagtaagtat-ttttgctatcgtctccacagggactggtgcgatattc--aagccgttcaacaatcgatattgttcta 19329392  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 45620388 - 45620344
Alignment:
Q  69 tgcgatattcgtaagccgttcaacaattgttatcgttctatgttaa 114  Q
    |||||||||| |||||||||||||||||| |||||||||| |||||    
T  45620388 tgcgatattc-taagccgttcaacaattgatatcgttctaagttaa 45620344  T

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Target: scaffold0426 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 263
Target Start/End: Complemental strand, 2404 - 2343
Alignment:
Q  200 tgggattagacaattcattaaccaaacgtcgcatatattctcttgatcaagcatatagattcta 263  Q
    |||||||||||  |||| | ||||| |||||||||||||||| |||||| ||||||||||||||    
T  2404 tgggattagac--ttcactgaccaatcgtcgcatatattctcatgatcatgcatatagattcta 2343  T

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