View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17290_low_13 (Length: 256)
Name: NF17290_low_13
Description: NF17290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17290_low_13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 5 - 256
Target Start/End: Original strand, 41168222 - 41168473
Alignment:
| Q |
5 |
ttctcccaatttcacacgtgactttatttcatgattctacatcatgtacatatcctagaagtgcttttgaatagagcactaaaatattcaaaaagggtct |
104 |
Q |
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| T |
41168222 |
ttctcccaatttcacacgtgactttatttcatgattctacatcatgtacatatcctagaagtgcttttgaatagagcactaaaatattcaaaaagggtct |
41168321 |
T |
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| Q |
105 |
aaaatggccagcataaagaacgtgcctgtggtgatgatattcaaaaacggtccatattggaaatatttgtcaccctcttgaggaaattgataacaattat |
204 |
Q |
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| T |
41168322 |
aaaatggccagcataaagaacgtgcctgtggtgatgatattcaaaaagggtccatattggaaatatttgtcaccctcttgaggaaattaataacaattat |
41168421 |
T |
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| Q |
205 |
ttaccatgaagtttaagctaaattataatgttgtgttatgttaggattgaac |
256 |
Q |
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| T |
41168422 |
ctaccatgaagtttaagctaaattataatgttgtgttatgttaggattgaac |
41168473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 142
Target Start/End: Original strand, 41170099 - 41170187
Alignment:
| Q |
53 |
catatcctagaagtgcttttgaa-tagagcactaaaatattcaaaaagggtctaaaatggccagcataaagaacgtgcctgtggtgatgat |
142 |
Q |
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| T |
41170099 |
catatcctacaagtgctttttaaatagagcaccaaaag-ttcaaca-gggtctgaaatgggcagcataaagaatgtgcctgtggtgatgat |
41170187 |
T |
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