View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17290_low_14 (Length: 248)
Name: NF17290_low_14
Description: NF17290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17290_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 54714434 - 54714227
Alignment:
| Q |
21 |
gctgatcagcttcaatatctttcaccggttgattaactcttccatcacccccagcagcagcattattcagaataccagcttcatctttcaccagttgatt |
120 |
Q |
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| T |
54714434 |
gctgatcagcttcaatatctttcaccggttgattaactcttccatcacccccggcagcagcactattcagaataccagcttcatctttcaccagttgatt |
54714335 |
T |
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| Q |
121 |
agctcttccttcaccttcagcagcagcactatagccattgagaaataatgccacagcaaggacaactagaagaattgaagtttttgccatagtgtacatt |
220 |
Q |
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| T |
54714334 |
agctcttccttcaccttcagcagcagcactatagccattgagaaataatgccacagcaaggacaactagaagaattgaagtttttgccatagtgtacaat |
54714235 |
T |
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| Q |
221 |
atcactca |
228 |
Q |
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|||||||| |
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| T |
54714234 |
atcactca |
54714227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 49 - 191
Target Start/End: Complemental strand, 54721335 - 54721193
Alignment:
| Q |
49 |
ttgattaactcttccatcacccccagcagcagcattattcagaataccagcttcatctttcaccagttgattagctcttccttcaccttcagcagcagca |
148 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |||| |
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| T |
54721335 |
ttgattaactcttccatcaccctcagcagcagcactattcagagtaccaacttcatctttcaccagttgattagctcttacttcaccctcagcagaagca |
54721236 |
T |
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| Q |
149 |
ctatagccattgagaaataatgccacagcaaggacaactagaa |
191 |
Q |
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| T |
54721235 |
ctatagccattcagaattaatgccacagcaaggacaagtagaa |
54721193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 54721357 - 54721298
Alignment:
| Q |
96 |
cagcttcatctttcaccag---ttgattagctcttccttcaccttcagcagcagcactat |
152 |
Q |
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| T |
54721357 |
cagcttcatctttcactagtaattgattaactcttccatcaccctcagcagcagcactat |
54721298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 49 - 191
Target Start/End: Complemental strand, 5297488 - 5297346
Alignment:
| Q |
49 |
ttgattaactcttccatcacccccagcagcagcattattcagaataccagcttcatctttcaccagttgattagctcttccttcaccttcagcagcagca |
148 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| ||||||| ||||||| |||| |
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| T |
5297488 |
ttgattaactcttccatcaccctcagcagcagcactattcagagtaccagattcatctttcaccagttgattagctcttacttcaccctcagcagaagca |
5297389 |
T |
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| Q |
149 |
ctatagccattgagaaataatgccacagcaaggacaactagaa |
191 |
Q |
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| T |
5297388 |
ctatagccattcagaattaatgccacagcaaggacaactagaa |
5297346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 5302868 - 5302783
Alignment:
| Q |
97 |
agcttcatctttcaccagttgattagctcttccttcaccttcagcagcagcactatagccattgagaaataatgccacagcaaggacaa |
185 |
Q |
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||||||||||||| ||||||||||| ||||||| |||| || ||||||||||||||||||| | ||||||||||||| ||||||||| |
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| T |
5302868 |
agcttcatctttctccagttgattatctcttcccacacc--ca-cagcagcactatagccattcacaaataatgccacaacaaggacaa |
5302783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 5297510 - 5297451
Alignment:
| Q |
96 |
cagcttcatctttcaccag---ttgattagctcttccttcaccttcagcagcagcactat |
152 |
Q |
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|||||||||||||||| || ||||||| ||||||| ||||| |||||||||||||||| |
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| T |
5297510 |
cagcttcatctttcactagtaattgattaactcttccatcaccctcagcagcagcactat |
5297451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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