View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17290_low_18 (Length: 227)
Name: NF17290_low_18
Description: NF17290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17290_low_18 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 18564581 - 18564355
Alignment:
| Q |
1 |
catatgatgatacgattcatgcatttttgggataaatcagagtcgatcgattcacacatgtcatgaatcgattcacacaaattcagagactttgtgatac |
100 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18564581 |
catatgatgatacgattcatgcatttttgagataaagcagagtgaatcgatttacacatgtcatgaatcgattcacacaaagtcagagactttgtgatac |
18564482 |
T |
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| Q |
101 |
gattcaattatgtatgaatctatttatgcagtataatatggaattttgacaaatgatattcaaagaaaaggaaggcttgagacacacgtgggcttgggtg |
200 |
Q |
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|||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| |
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| T |
18564481 |
gattcagttatgtatgaatcgattcatgcagtataatatggaattttgacaaatgatatttaaagaaaatgaaggcttgagacagacgtgggcttgggtg |
18564382 |
T |
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| Q |
201 |
ctttaacatattctaagacaacaacaa |
227 |
Q |
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| T |
18564381 |
ctttaacatattctaagacaacaacaa |
18564355 |
T |
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Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 7311232 - 7311445
Alignment:
| Q |
4 |
atgatgatacgattcatgcatttttgggataaatcagagtcgatcgattcacacatgtcatgaatcgattcacacaaattcagagacttt-gtgatacga |
102 |
Q |
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|||||||||| |||||||||||||| | | ||||| ||| ||||||||| |||||| ||| ||||||||||||||| ||||||||||| ||||||||| |
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| T |
7311232 |
atgatgatacatttcatgcatttttgagtttaatcaaagtgaatcgattcagacatgttatgcatcgattcacacaaagtcagagacttttgtgatacga |
7311331 |
T |
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| Q |
103 |
ttcaattatgtatgaatctatttatgcagtataatatggaattttgacaaatgatattcaaagaaaaggaaggcttgagacacacgtgggcttgggtgct |
202 |
Q |
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|||| | |||||||||| ||| ||||||| |||||| |||||||||||||||||| |||| |||||||||| | ||| ||||||| |||| ||||||| |
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| T |
7311332 |
ttcagatgtgtatgaatcgattcatgcagtgaaatatgaaattttgacaaatgatatgcaaacaaaaggaaggttagaggcacacgtaggctagggtgct |
7311431 |
T |
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| Q |
203 |
ttaacatattctaa |
216 |
Q |
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|||||||||||| |
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| T |
7311432 |
aaaacatattctaa |
7311445 |
T |
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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 831197 - 831280
Alignment:
| Q |
8 |
tgatacgattcatgcatttttgggataaatcagagtcgatcgattcacacatgtcatgaatcgattcacacaaattcagagact |
91 |
Q |
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| T |
831197 |
tgatacgattcatgcatttttgagacaagtcagagttggtcgattcatacatgttatgaatcgtttcacacaaagtcagagact |
831280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 1196377 - 1196460
Alignment:
| Q |
8 |
tgatacgattcatgcatttttgggataaatcagagtcgatcgattcacacatgtcatgaatcgattcacacaaattcagagact |
91 |
Q |
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| T |
1196377 |
tgatacgattcatgcatttttgagacaagtcagagttggtcgattcatacatgttatgaatcgtttcacacaaagtcagagact |
1196460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 834885 - 834956
Alignment:
| Q |
144 |
ttttgacaaatgatattcaaagaaaaggaaggcttgagacacacgtgggcttgggtgctttaacatattcta |
215 |
Q |
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|||| ||||||||||| |||||||||||||||| |||||||| | | | |||||||||||||||||||| |
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| T |
834885 |
tttttacaaatgatatgtgaagaaaaggaaggcttaagacacacataagttagggtgctttaacatattcta |
834956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 854926 - 854997
Alignment:
| Q |
144 |
ttttgacaaatgatattcaaagaaaaggaaggcttgagacacacgtgggcttgggtgctttaacatattcta |
215 |
Q |
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| T |
854926 |
ttttgacaaatgatatgtgaagaaaaggaaggcttaagacacacataagttagggtgctataacatattcta |
854997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 1200065 - 1200136
Alignment:
| Q |
144 |
ttttgacaaatgatattcaaagaaaaggaaggcttgagacacacgtgggcttgggtgctttaacatattcta |
215 |
Q |
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| T |
1200065 |
tttttacaaatgatatgtgaagaaaaggaaggcttaagacacacataagttagggtgctttaacatattcta |
1200136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 1212930 - 1213001
Alignment:
| Q |
144 |
ttttgacaaatgatattcaaagaaaaggaaggcttgagacacacgtgggcttgggtgctttaacatattcta |
215 |
Q |
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| T |
1212930 |
ttttgacaaatgatatgtgaagaaaaggaaggcttaagacacacataagttagggtgctataacatattcta |
1213001 |
T |
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Target: scaffold0035 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 98613 - 98686
Alignment:
| Q |
4 |
atgatgatacgattcatgcatttttgggataaatcagagtcgatcgattcacacatgtcatgaatcgattcaca |
77 |
Q |
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|||||||||||| ||||||||||||| |||||| |||| | ||||||| | ||||||||||||||||||||| |
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| T |
98613 |
atgatgatacgactcatgcatttttgagataaaacagaatgaatcgatttagtcatgtcatgaatcgattcaca |
98686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 16740302 - 16740373
Alignment:
| Q |
50 |
attcacacatgtcatgaatcgattcacacaaattcagagacttt-gtgatacgattcaattatgtatgaatc |
120 |
Q |
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||||||| | |||||||||| ||||||||||| | ||| ||||| |||||||||||||| | |||||||||| |
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| T |
16740302 |
attcacagaagtcatgaatcaattcacacaaagttagaaacttttgtgatacgattcaaatgtgtatgaatc |
16740373 |
T |
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