View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17290_low_4 (Length: 557)

Name: NF17290_low_4
Description: NF17290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17290_low_4
NF17290_low_4
[»] chr3 (7 HSPs)
chr3 (1-506)||(2208487-2208989)
chr3 (69-143)||(20464973-20465047)
chr3 (95-131)||(26716136-26716172)
chr3 (50-143)||(33579891-33579985)
chr3 (89-146)||(31794097-31794154)
chr3 (50-130)||(38545823-38545904)
chr3 (80-132)||(18011042-18011094)
[»] chr5 (2 HSPs)
chr5 (46-130)||(26878087-26878172)
chr5 (50-130)||(41630526-41630607)
[»] chr8 (2 HSPs)
chr8 (44-176)||(5333406-5333543)
chr8 (71-130)||(19444067-19444126)
[»] chr2 (9 HSPs)
chr2 (47-128)||(41327540-41327622)
chr2 (44-132)||(17151456-17151545)
chr2 (68-130)||(28871791-28871853)
chr2 (50-142)||(30400019-30400112)
chr2 (89-146)||(459265-459322)
chr2 (50-130)||(4904129-4904210)
chr2 (94-131)||(28533983-28534020)
chr2 (69-130)||(31128784-31128845)
chr2 (89-149)||(22421765-22421825)
[»] chr4 (9 HSPs)
chr4 (69-146)||(4937862-4937939)
chr4 (89-146)||(18138904-18138961)
chr4 (89-146)||(49126117-49126174)
chr4 (95-146)||(3336153-3336204)
chr4 (50-130)||(54021905-54021986)
chr4 (50-129)||(8670531-8670611)
chr4 (68-128)||(17949326-17949386)
chr4 (68-128)||(17953178-17953238)
chr4 (95-176)||(52944306-52944391)
[»] chr7 (5 HSPs)
chr7 (50-176)||(37837441-37837569)
chr7 (221-332)||(6001854-6001963)
chr7 (45-130)||(22087344-22087430)
chr7 (95-176)||(25068062-25068146)
chr7 (50-130)||(9977189-9977270)
[»] chr1 (7 HSPs)
chr1 (78-146)||(1602102-1602169)
chr1 (270-340)||(48809358-48809428)
chr1 (50-132)||(3228295-3228378)
chr1 (46-175)||(27580107-27580238)
chr1 (90-148)||(7312097-7312155)
chr1 (50-130)||(14872668-14872748)
chr1 (78-130)||(27456568-27456620)
[»] chr6 (2 HSPs)
chr6 (50-130)||(34018586-34018667)
chr6 (89-149)||(25337596-25337656)


Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 2208989 - 2208487
Alignment:
Q  1 atggaaggccaaaaattaactacgactaaatgctcaaaaataatacaatgttgacacccaattcattgttgaatatataattgactgaaatcggtctttc 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2208989 atggaaggccaaaaattaactacgactaaatgctcacaaataatacaatgttgacacccaaatcattgttgaatatataattgactgaaatcggtctttc 2208890  T
Q  101 aatagaaatcaaacgaacaccgcgacaagatggataatcaaacaacacctcaacgacgaacaacacaacgccgcacataatgaaaaaacaaaactagatc 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  2208889 aatagaaatcaaacgaacaccacgacaagatggataatcaaacaacaccgcaatgacgaacaacacaacgccgcacacaatgagaaaacaaaactagatc 2208790  T
Q  201 aatgtgaagacaattatttaatttaaattaaaataaggagaaaaaggtgaagataaggtgatttcgggtaaaaaatttgattcaaaaccaccttatcaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2208789 aatgtgaagacaattatttaatttaaattaaaataaggagaaaaaggtgaagataaggtgatttcgggtaaaaaaattgattcaaaaccaccttatcaat 2208690  T
Q  301 taagaaaatggaagagagaacatatagagaaagaaaactaaagccgacttgttaagtgtgaaatattgttgtcaaataacacgatgaattattaaaatga 400  Q
     ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  2208689 gaagaaaatggaagagagaacatatagagaaagaaaactagagctgacttgttaagtgtgaaatattgttgtcaaataacacgataaattattaaaatgg 2208590  T
Q  401 ttaacattttgatgttgacattggatgtaaaattggatgaattattattaatgataaagagctcattaatcaagtaattagcctcgagtgattaatgagc 500  Q
    |||||||||| ||||||||||||||||||||||| ||||||||   ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  2208589 ttaacattttcatgttgacattggatgtaaaattagatgaatt---attaaagataaagagctcattaaccaagtaattagcctcaagtgattaatgagc 2208493  T
Q  501 tccacc 506  Q
    ||||||    
T  2208492 tccacc 2208487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 20464973 - 20465047
Alignment:
Q  69 ttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaagatggataatcaaac 143  Q
    |||||| | |||||||||||||||| ||||||||||| | | ||| |||||||||||||||| | | ||||||||    
T  20464973 ttgaatttgtaattgactgaaatcgatctttcaataggatttaaatgaacaccgcgacaagacgcaaaatcaaac 20465047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 26716136 - 26716172
Alignment:
Q  95 tctttcaatagaaatcaaacgaacaccgcgacaagat 131  Q
    ||||||||||||||||||||||||||||| |||||||    
T  26716136 tctttcaatagaaatcaaacgaacaccgcaacaagat 26716172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 33579985 - 33579891
Alignment:
Q  50 gttgacacccaattcattg-ttgaatatataattgactgaaatcggtctttcaata-gaaatcaaacgaacaccgcgacaagatggataatcaaac 143  Q
    |||||| ||||| |||||| |||||| | |||||||||||  ||| |||||||||| ||||| |||||||||||||||||||| | | ||||||||    
T  33579985 gttgacgcccaaatcattggttgaatttgtaattgactgatgtcgatctttcaatatgaaat-aaacgaacaccgcgacaagacgcaaaatcaaac 33579891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 31794154 - 31794097
Alignment:
Q  89 aatcggtctttcaatagaaatcaaacgaacaccgcgacaagatggataatcaaacaac 146  Q
    ||||| ||||||||||  ||||||| ||||||||| ||||||| || |||||||||||    
T  31794154 aatcgatctttcaatatgaatcaaatgaacaccgcaacaagatagaaaatcaaacaac 31794097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 38545904 - 38545823
Alignment:
Q  50 gttgacacccaattcattg-ttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaaga 130  Q
    |||||| ||||| |||||| |||||| | |||||||||||  ||| ||||||||| ||||  |||| |||||||||||||||    
T  38545904 gttgacgcccaaatcattggttgaatttgtaattgactgatgtcgatctttcaatggaaaataaacaaacaccgcgacaaga 38545823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 18011094 - 18011042
Alignment:
Q  80 attgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaagatg 132  Q
    ||||||| || ||| ||||||||||||||  |||||||||||| |||||||||    
T  18011094 attgactaaagtcgatctttcaatagaaactaaacgaacaccgtgacaagatg 18011042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 26878087 - 26878172
Alignment:
Q  46 caatgttgacacccaattcattg-ttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaaga 130  Q
    |||||||||| ||||| |||||| |||||||| |||||||||||  ||| |||||||| |||||| ||||||||||||||||||||    
T  26878087 caatgttgacgcccaaatcattgattgaatatctaattgactgatgtcgatctttcaagagaaattaaacgaacaccgcgacaaga 26878172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 41630607 - 41630526
Alignment:
Q  50 gttgacacccaattcattg-ttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaaga 130  Q
    |||||| ||||| |||||| |||||| | |||||||||||| ||| ||||| ||||| ||  |||||||||||| |||||||    
T  41630607 gttgacgcccaaatcattgattgaatttgtaattgactgaagtcgatcttttaataggaactaaacgaacaccgtgacaaga 41630526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 176
Target Start/End: Complemental strand, 5333543 - 5333406
Alignment:
Q  44 tacaatgttgacacccaattcattg-ttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaagatggataatcaaa 142  Q
    ||||| |||||| ||||| | |||| |||||||| | |||||||||| | | ||||||||||| || |||||||||||||  |||||| | | |||||||    
T  5333543 tacaacgttgacgcccaaataattgattgaatatgtgattgactgaagttgatctttcaataggaaccaaacgaacaccggaacaagacgcaaaatcaaa 5333444  T
Q  143 caacacctca----acgacgaacaacacaacgccgcac 176  Q
    ||||||| ||    ||||||||||||||||| ||||||    
T  5333443 caacaccgcacaagacgacgaacaacacaacaccgcac 5333406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 19444067 - 19444126
Alignment:
Q  71 gaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaaga 130  Q
    |||| ||| |||||||||| ||||||||| ||||  ||||||||||||||||| ||||||    
T  19444067 gaatctatgattgactgaagtcggtcttttaataagaatcaaacgaacaccgcaacaaga 19444126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 41327622 - 41327540
Alignment:
Q  47 aatgttgacacccaattcattg-ttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaa 128  Q
    |||||||||  |||| |||||| |||||| | |||||||||||||| | |||||||||||||| |||||||||||||| ||||    
T  41327622 aatgttgacgtccaaatcattggttgaatttgtaattgactgaaatagatctttcaatagaaaccaaacgaacaccgcaacaa 41327540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 17151545 - 17151456
Alignment:
Q  44 tacaatgttgacacccaattcattg-ttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaagatg 132  Q
    ||||| || ||| ||||| |||||| |||||| | |||||||||||||| | ||||||||||| ||||||||||||||||  ||||||||    
T  17151545 tacaacgtcgacgcccaaatcattgattgaatctgtaattgactgaaattgatctttcaataggaatcaaacgaacaccgtaacaagatg 17151456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 28871791 - 28871853
Alignment:
Q  68 gttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaaga 130  Q
    ||||||| | |||||||||||| | | ||||||||||| || |||||||||||||||||||||    
T  28871791 gttgaatctgtaattgactgaagttgatctttcaataggaaccaaacgaacaccgcgacaaga 28871853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 30400019 - 30400112
Alignment:
Q  50 gttgacacccaattcattg-ttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaagatggataatcaaa 142  Q
    |||||| ||||| |||||| |||||| | |||||||||||| | | ||||||||||| ||  ||||||||||||||||| |||| | |||||||    
T  30400019 gttgacgcccaaatcattgattgaatttgtaattgactgaagttgatctttcaataggaactaaacgaacaccgcgacacgatgcaaaatcaaa 30400112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 459265 - 459322
Alignment:
Q  89 aatcggtctttcaatagaaatcaaacgaacaccgcgacaagatggataatcaaacaac 146  Q
    ||||| ||||||||||  ||||||| ||||||||| |||||| ||| |||||||||||    
T  459265 aatcgatctttcaatatgaatcaaatgaacaccgcaacaagacggaaaatcaaacaac 459322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 4904129 - 4904210
Alignment:
Q  50 gttgacacccaattcatt-gttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaaga 130  Q
    |||||||||||| ||||  ||||||| | |||||||||||  ||| ||||||||||  || |||||||||||||| ||||||    
T  4904129 gttgacacccaaatcatcagttgaatttgtaattgactgatgtcgatctttcaatatgaaccaaacgaacaccgcaacaaga 4904210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 28533983 - 28534020
Alignment:
Q  94 gtctttcaatagaaatcaaacgaacaccgcgacaagat 131  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  28533983 gtctttcaataggaatcaaacgaacaccgcaacaagat 28534020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 31128784 - 31128845
Alignment:
Q  69 ttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaaga 130  Q
    |||||| | ||||||||||| |||| | ||||||||| ||  ||||||||||||||||||||    
T  31128784 ttgaatttgtaattgactgatatcgatttttcaataggaactaaacgaacaccgcgacaaga 31128845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 22421825 - 22421765
Alignment:
Q  89 aatcggtctttcaatagaaatcaaacgaacaccgcgacaagatggataatcaaacaacacc 149  Q
    ||||| ||||||||||  ||||||| ||||||||| | |||||||  ||||||||||||||    
T  22421825 aatcgatctttcaatacgaatcaaatgaacaccgcaagaagatgggaaatcaaacaacacc 22421765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 4937939 - 4937862
Alignment:
Q  69 ttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaagatggataatcaaacaac 146  Q
    |||||| |||||| ||||||| | | |||||||||| ||||||||||||| |||| |||||||| | |||||||||||    
T  4937939 ttgaatttataatcgactgaagttgatctttcaataaaaatcaaacgaactccgcaacaagatgtaaaatcaaacaac 4937862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 18138904 - 18138961
Alignment:
Q  89 aatcggtctttcaatagaaatcaaacgaacaccgcgacaagatggataatcaaacaac 146  Q
    ||||| ||||||||||||||||||| |||||| || |||||||||| |||||||||||    
T  18138904 aatcgatctttcaatagaaatcaaatgaacactgcaacaagatggaaaatcaaacaac 18138961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 49126117 - 49126174
Alignment:
Q  89 aatcggtctttcaatagaaatcaaacgaacaccgcgacaagatggataatcaaacaac 146  Q
    ||||| ||||||||||||||||||| |||||| || |||||||||| |||||||||||    
T  49126117 aatcgatctttcaatagaaatcaaatgaacactgcaacaagatggaaaatcaaacaac 49126174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 3336153 - 3336204
Alignment:
Q  95 tctttcaatagaaatcaaacgaacaccgcgacaagatggataatcaaacaac 146  Q
    ||||||||||  ||||||| ||||||||| |||||||||| |||||||||||    
T  3336153 tctttcaatatgaatcaaatgaacaccgcaacaagatggaaaatcaaacaac 3336204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 54021986 - 54021905
Alignment:
Q  50 gttgacacccaattcattg-ttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaaga 130  Q
    ||||||| |||| |||||| || ||| | |||||||||||  ||| ||||||||||| ||  ||||||||||||||||||||    
T  54021986 gttgacatccaaatcattgattcaatttgtaattgactgatgtcgatctttcaataggaactaaacgaacaccgcgacaaga 54021905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 8670611 - 8670531
Alignment:
Q  50 gttgacacccaattcattg-ttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaag 129  Q
    |||||| ||||| |||||| |||||| | |||||||||||   || ||||||||||| ||  |||||||||||||||||||    
T  8670611 gttgacgcccaaatcattggttgaatttgtaattgactgatgccgatctttcaataggaaataaacgaacaccgcgacaag 8670531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 17949326 - 17949386
Alignment:
Q  68 gttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaa 128  Q
    ||||||| | |||||||||||  | | ||||||||||| ||| ||||||||||||||||||    
T  17949326 gttgaatttgtaattgactgatgtagatctttcaataggaattaaacgaacaccgcgacaa 17949386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 17953178 - 17953238
Alignment:
Q  68 gttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaa 128  Q
    ||||||| | |||||||||||  | | ||||||||||| ||| ||||||||||||||||||    
T  17953178 gttgaatttgtaattgactgatgtagatctttcaataggaattaaacgaacaccgcgacaa 17953238  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 52944391 - 52944306
Alignment:
Q  95 tctttcaatagaaatcaaacgaacaccgcgacaagatggataatcaaacaacacctc----aacgacgaacaacacaacgccgcac 176  Q
    ||||||||||  || |||||||||||||| |||||| | | ||| ||||||| || |    |||||||||||||||||||||||||    
T  52944391 tctttcaatatgaaacaaacgaacaccgcaacaagacgcaaaattaaacaacgccgcacaaaacgacgaacaacacaacgccgcac 52944306  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 37837441 - 37837569
Alignment:
Q  50 gttgacacccaattcattg-ttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaagatggataatcaaacaacac 148  Q
    |||||| ||||| |||||| |||||| | |||||||||||  ||| ||||||||||| ||  |||||||||||||||||||| | | ||||||||  | |    
T  37837441 gttgacgcccaaatcattggttgaatttgtaattgactgatgtcgatctttcaataggaactaaacgaacaccgcgacaagacgcaaaatcaaacgccgc 37837540  T
Q  149 -ctcaacgacgaacaacacaacgccgcac 176  Q
     |   ||||||||||||||||||||||||    
T  37837541 acaagacgacgaacaacacaacgccgcac 37837569  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 332
Target Start/End: Complemental strand, 6001963 - 6001854
Alignment:
Q  221 atttaaattaaaataaggagaaaaaggtgaagataaggtgatttcgggtaaaaaatttgattcaaaaccaccttatcaattaagaaaatggaagagagaa 320  Q
    ||||| ||||||||| |||||||||| |||||||  ||||||||| ||| ||||||| ||| ||||| ||||   ||||| |||||||||||||||| ||    
T  6001963 atttagattaaaatagggagaaaaagatgaagatg-ggtgatttcaggtcaaaaatt-gatccaaaatcaccccttcaataaagaaaatggaagagaaaa 6001866  T
Q  321 catatagagaaa 332  Q
    | || |||||||    
T  6001865 cctaaagagaaa 6001854  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 22087430 - 22087344
Alignment:
Q  45 acaatgttgacacccaattcattg-ttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaaga 130  Q
    |||| |||||||||||| |||||| |||||| | |||||||||||| | | |||||||||||  ||||||| ||||| || ||||||    
T  22087430 acaacgttgacacccaagtcattgattgaatttgtaattgactgaagttgatctttcaataggtatcaaacaaacacagcaacaaga 22087344  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 25068146 - 25068062
Alignment:
Q  95 tctttcaatagaaatcaaacgaacaccgcgacaagatggataatcaaacaacacctcaa---cgacgaacaacacaacgccgcac 176  Q
    ||||||||||| ||  ||||||||||||| |||||||| | ||| ||| |||||| ||    |||||||||||||||||||||||    
T  25068146 tctttcaataggaacaaaacgaacaccgcaacaagatgcaaaataaaaaaacaccgcacaagcgacgaacaacacaacgccgcac 25068062  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 9977189 - 9977270
Alignment:
Q  50 gttgacacccaattcattgtt-gaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaaga 130  Q
    |||||| ||||| |||||||| |||| | |||||||||||| ||| ||||||||||| ||  ||| || |||||||||||||    
T  9977189 gttgacgcccaaatcattgtttgaatttgtaattgactgaagtcgatctttcaataggaactaaatgagcaccgcgacaaga 9977270  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 1602169 - 1602102
Alignment:
Q  78 taattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaagatggataatcaaacaac 146  Q
    ||||||||| || ||| |||||||||||||||||||||||| |||| |||||||| | |||||||||||    
T  1602169 taattgact-aagtcgatctttcaatagaaatcaaacgaacgccgcaacaagatgcaaaatcaaacaac 1602102  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 48809358 - 48809428
Alignment:
Q  270 aaaaaatttgattcaaaaccaccttatcaattaagaaaatggaagagagaacatatagagaaagaaaacta 340  Q
    |||||| |||| |||||||||||| |||||| || |||||||||||||| ||||| ||| ||| |||||||    
T  48809358 aaaaaaattgactcaaaaccacctcatcaataaataaaatggaagagaggacatagagacaaaaaaaacta 48809428  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 3228378 - 3228295
Alignment:
Q  50 gttgacacccaattcattg-ttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaagatg 132  Q
    |||||| ||||| |||||| ||| || | ||||||||||| |||| ||||||||||| ||  |||| |||||||||||||||||    
T  3228378 gttgacgcccaaatcattgattgtatttgtaattgactgatatcgatctttcaataggaactaaacaaacaccgcgacaagatg 3228295  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 27580107 - 27580238
Alignment:
Q  46 caatgttgacacccaattcattg-ttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaagatggataatcaaaca 144  Q
    |||||||||| ||||| |||||  |||||| | ||||| |||||| ||| ||||||||||| ||  ||| |||||||||||||||| | | |||||||      
T  27580107 caatgttgacgcccaaatcatttattgaatttgtaatttactgaagtcgatctttcaataggaactaaatgaacaccgcgacaagacgcaaaatcaaatg 27580206  T
Q  145 acac-ctcaacgacgaacaacacaacgccgca 175  Q
     ||| |   |||||||||||||||||||||||    
T  27580207 ccacacgatacgacgaacaacacaacgccgca 27580238  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 7312097 - 7312155
Alignment:
Q  90 atcggtctttcaatagaaatcaaacgaacaccgcgacaagatggataatcaaacaacac 148  Q
    |||| ||||||||||  ||||||| ||||||||| |||||| ||| |||||||||||||    
T  7312097 atcgatctttcaatatgaatcaaatgaacaccgcaacaagacggaaaatcaaacaacac 7312155  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 14872748 - 14872668
Alignment:
Q  50 gttgacacccaattcattg-ttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaaga 130  Q
    |||||| ||||| |||||| |||||| | |||||||||||  ||| ||||||||||||| | ||| ||||||||||||||||    
T  14872748 gttgacgcccaaatcattggttgaatttgtaattgactgatgtcgatctttcaatagaact-aaatgaacaccgcgacaaga 14872668  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 27456620 - 27456568
Alignment:
Q  78 taattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaaga 130  Q
    |||||||||||  ||| ||||||||||| ||  ||||||||||||||||||||    
T  27456620 taattgactgatgtcgatctttcaataggaactaaacgaacaccgcgacaaga 27456568  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 34018667 - 34018586
Alignment:
Q  50 gttgacacccaattcatt-gttgaatatataattgactgaaatcggtctttcaatagaaatcaaacgaacaccgcgacaaga 130  Q
    |||||| ||||| ||||| ||||||| | ||||| |||||  ||| ||||||||||| ||  ||||||||||||||||||||    
T  34018667 gttgacgcccaaatcattagttgaatttgtaattaactgatctcgatctttcaataggaactaaacgaacaccgcgacaaga 34018586  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 25337656 - 25337596
Alignment:
Q  89 aatcggtctttcaatagaaatcaaacgaacaccgcgacaagatggataatcaaacaacacc 149  Q
    ||||| ||||||||||  ||||||| ||||||||| |||||| | | ||||||||||||||    
T  25337656 aatcgatctttcaatatgaatcaaatgaacaccgcaacaagacgaaaaatcaaacaacacc 25337596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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