View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17290_low_6 (Length: 456)
Name: NF17290_low_6
Description: NF17290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17290_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 41 - 276
Target Start/End: Complemental strand, 2209397 - 2209150
Alignment:
| Q |
41 |
ataagagatctagaacactcagatcagaaccaaagaaaata-gtagcaaacaagtaagcaaaaatgaaagagagcaaagtgaaaggtg---aaacaatgt |
136 |
Q |
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|||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2209397 |
ataagagatctagaacactcagatcagaaccaaaaaaaaaaagtagcaaacaagtaagcaaaaatgaaagagagcaaagtgaaaggtggtgaaacaatgt |
2209298 |
T |
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| Q |
137 |
atgtagtggtttttt--------acaaaagaagaagaccttcctcccttttataggagagcaacataggataccaaaaatttgctactatggtttttgtt |
228 |
Q |
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| T |
2209297 |
atgtagtggtttttttgttttttacaaaataagaagaccttccacccttttataggagagcaacataggataccaaaaatttgctactatggtttttgtt |
2209198 |
T |
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| Q |
229 |
ttatgtggtcaatgtccagctctattgtttgcataagcatgtactcca |
276 |
Q |
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| T |
2209197 |
ttatgtggtcaatgtccagctctattgtttgcataagcatgtactcca |
2209150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 334 - 456
Target Start/End: Complemental strand, 2209092 - 2208970
Alignment:
| Q |
334 |
gaatgcaaattgaaaaatgtttaggataaacatactctttatcacatannnnnnnggtagtattcatttacatttttaattaacaaatagcaaaaatgat |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2209092 |
gaatgcaaattgaaaaatgtttaggataaacatactctttatcacatatttttttggtattattcatttacatttttaattaacaaatagcaaaaatgat |
2208993 |
T |
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| Q |
434 |
acaatggaaggccaaaaattaac |
456 |
Q |
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||||||||||||||||||||||| |
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| T |
2208992 |
acaatggaaggccaaaaattaac |
2208970 |
T |
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