View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17290_low_8 (Length: 377)

Name: NF17290_low_8
Description: NF17290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17290_low_8
NF17290_low_8
[»] chr6 (3 HSPs)
chr6 (10-233)||(20382745-20382967)
chr6 (27-237)||(14759141-14759351)
chr6 (253-323)||(14759039-14759108)
[»] chr2 (1 HSPs)
chr2 (141-237)||(13498198-13498295)
[»] chr8 (1 HSPs)
chr8 (1-71)||(9774278-9774346)
[»] chr5 (1 HSPs)
chr5 (21-230)||(17346710-17346919)
[»] chr3 (2 HSPs)
chr3 (124-172)||(6817161-6817209)
chr3 (124-207)||(23391109-23391190)
[»] chr1 (1 HSPs)
chr1 (150-211)||(7612921-7612982)


Alignment Details
Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 20382967 - 20382745
Alignment:
Q  10 caaacatacagaacaaggataacatcaatattaaaggacaactagaatcatgatatattactaagatcatagaaaatacatactaagtttgattagttag 109  Q
    |||||||||| | |||||||||||||||||||||||    |||||||||||   || ||||||||||||||||||||||||||| ||||||||||||||     
T  20382967 caaacatacatagcaaggataacatcaatattaaagattgactagaatcat---attttactaagatcatagaaaatacatactgagtttgattagttac 20382871  T
Q  110 ---tagttacatacaaatgagatttagctactcgttgttatgatagccttgcaaaattggaagaaatgaatggaatacttatcaagatgatgatttctca 206  Q
       || |  || ||||||||||||||||||||| || | ||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  20382870 acctaatccca-acaaatgagatttagctactcattatcatggtagccttgcaaaattggaagaaatgagtggaatacatatcaagatgatgatttctca 20382772  T
Q  207 atgaattgtgttgaatccaccttctaa 233  Q
    ||||||  |||||||||||||||||||    
T  20382771 atgaatcttgttgaatccaccttctaa 20382745  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 14759351 - 14759141
Alignment:
Q  27 gataacatcaatattaaaggacaactagaatcatgatatattactaagatcatagaaaatacatactaagtttgattagttag---tagttacatacaaa 123  Q
    ||||||||||||||||||| ||||||||||||||   ||||||||||||||||| | |||||||| | |||||||| |  ||    || |  || |||||    
T  14759351 gataacatcaatattaaagaacaactagaatcat---atattactaagatcataaagaatacatattgagtttgatcaaatacctttaatccca-acaaa 14759256  T
Q  124 tgagatttagctactcgttgttatgatagccttgcaaaattggaagaaatgaatggaatacttatcaagatgatgatttctcaa-tgaattgtgttgaat 222  Q
    ||||||||| |||||| || | ||| ||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||| |||||  ||||||||    
T  14759255 tgagatttaactactcattatcatggtagccttgcaaaattggaagaaatggatggaatgcatatcaagatgttgatttctcaattgaatcttgttgaat 14759156  T
Q  223 ccaccttctaacact 237  Q
    ||| | |||||||||    
T  14759155 ccatcctctaacact 14759141  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 14759108 - 14759039
Alignment:
Q  253 tgtctctctctaaaaatacaggttaatatttacctggaaatgaaggaatgacttttatactctttctgata 323  Q
    ||||||||||||||| |||| |||| |||||  || |||||||||||   |||||||||||||||||||||    
T  14759108 tgtctctctctaaaagtacaagtta-tatttggctagaaatgaaggagcaacttttatactctttctgata 14759039  T

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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 13498198 - 13498295
Alignment:
Q  141 ttgttatgatagccttgcaaaattggaagaaatgaatggaatacttatcaagatgatgatttctcaa-tgaattgtgttgaatccaccttctaacact 237  Q
    |||| ||| ||||||| |||||||||||||||||  ||||||||||||||||||| ||||||||||| |||||  ||||||||||||||| |||||||    
T  13498198 ttgtcatggtagccttacaaaattggaagaaatgtgtggaatacttatcaagatgttgatttctcaattgaatcttgttgaatccaccttataacact 13498295  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 9774278 - 9774346
Alignment:
Q  1 ataacaaaacaaacatacagaacaaggataacatcaatattaaaggacaactagaatcatgatatattact 71  Q
    |||||||| |||||||||| || |||||||||||||||  |||||||||||||||||||||||||||||||    
T  9774278 ataacaaatcaaacatacataagaaggataacatcaat--taaaggacaactagaatcatgatatattact 9774346  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 17346710 - 17346919
Alignment:
Q  21 aacaaggataacatcaatattaaaggacaactagaatcatgatatattactaagatcatagaaaatacatactaagtttgattagttagtagtta---ca 117  Q
    |||||||||||||||||||||||   ||||||| ||||||   ||||| ||||||||| ||||||||||||   |||||  ||| |||  | |||   |     
T  17346710 aacaaggataacatcaatattaataaacaactaaaatcat---atattgctaagatcaaagaaaatacatatcgagttttgttaattac-atttaatccc 17346805  T
Q  118 tacaaatgagatttagctactcgttgttatgatagccttgcaaaattg-gaagaaatgaatggaatacttatcaagatgatgatttctcaatgaattgtg 216  Q
     ||||||||||||||||||||| |||| ||| ||||||||||||| || ||||||| || || |||||  ||||||||  |||||||||||| |||   |    
T  17346806 aacaaatgagatttagctactcattgtcatggtagccttgcaaaaatgagaagaaaagagtgaaatacacatcaagattgtgatttctcaataaatctgg 17346905  T
Q  217 ttgaatccaccttc 230  Q
    ||||||||| ||||    
T  17346906 ttgaatccatcttc 17346919  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 6817209 - 6817161
Alignment:
Q  124 tgagatttagctactcgttgttatgatagccttgcaaaattggaagaaa 172  Q
    |||||||||||||||| |||| ||| ||||||||||||| |||||||||    
T  6817209 tgagatttagctactcattgtcatggtagccttgcaaaaatggaagaaa 6817161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 207
Target Start/End: Complemental strand, 23391190 - 23391109
Alignment:
Q  124 tgagatttagctactcgttgttatgatagccttgcaaaattggaagaaatgaatggaatacttatcaagatgatgatttctcaa 207  Q
    ||||||||||||||||  ||  ||| |||||||||||| | |||||||||| |||| | ||  |||||||||| ||||||||||    
T  23391190 tgagatttagctactcagtgccatggtagccttgcaaattcggaagaaatggatgggaaac--atcaagatgaagatttctcaa 23391109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 7612921 - 7612982
Alignment:
Q  150 tagccttgcaaaattggaagaaatgaatggaatacttatcaagatgatgatttctcaatgaa 211  Q
    |||||||||||||||||||||||| | |||||  | || ||||||  |||||||||||||||    
T  7612921 tagccttgcaaaattggaagaaataagtggaaagcataacaagattgtgatttctcaatgaa 7612982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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