View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17291_high_4 (Length: 227)

Name: NF17291_high_4
Description: NF17291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17291_high_4
NF17291_high_4
[»] chr6 (9 HSPs)
chr6 (16-220)||(23001523-23001728)
chr6 (16-220)||(23786662-23786867)
chr6 (16-220)||(23002045-23002252)
chr6 (16-220)||(23786138-23786345)
chr6 (16-220)||(18155835-18156044)
chr6 (16-220)||(18155311-18155520)
chr6 (16-183)||(21084877-21085046)
chr6 (16-183)||(21039826-21039995)
chr6 (97-183)||(21062999-21063086)
[»] scaffold0339 (2 HSPs)
scaffold0339 (25-119)||(655-750)
scaffold0339 (25-119)||(9006-9101)
[»] chr4 (1 HSPs)
chr4 (25-119)||(47271430-47271525)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 23001728 - 23001523
Alignment:
Q  16 ttttcttcatctcctttgctggttttcgaatcttttcttcatctttagtctggacaacttcagacccttcagctccatgttatcaatcttcccttttgat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||    
T  23001728 ttttcttcatctcctttgctggttttcgaatcttttcttcatctttagtctggacaacttcagacccttcaggtccatgtcatcaatcttccgttttgat 23001629  T
Q  116 gcttttaaataacctgctgactttttgccccgtttcttaggggg-tcactttgatgctctactagaggaagttgtggccttctcaatgattcttgttgat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23001628 gcttttaaataacctgctgactttttgccccgtttcttagggggctcactttgatgctctactagaggaagttgtggccttctcaatgattcttgttgat 23001529  T
Q  215 attctt 220  Q
     |||||    
T  23001528 cttctt 23001523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 23786662 - 23786867
Alignment:
Q  16 ttttcttcatctcctttgctggttttcgaatcttttcttcatctttagtctggacaacttcagacccttcagctccatgttatcaatcttcccttttgat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||    
T  23786662 ttttcttcatctcctttgctggttttcgaatcttttcttcatctttagtctggacaacttcagacccttcaggtccatgtcatcaatcttccgttttgat 23786761  T
Q  116 gcttttaaataacctgctgactttttgccccgtttcttaggggg-tcactttgatgctctactagaggaagttgtggccttctcaatgattcttgttgat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23786762 gcttttaaataacctgctgactttttgccccgtttcttagggggctcactttgatgctctactagaggaagttgtggccttctcaatgattcttgttgat 23786861  T
Q  215 attctt 220  Q
     |||||    
T  23786862 cttctt 23786867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 23002045 - 23002252
Alignment:
Q  16 ttttcttcatctcctttgctggttttcgaatcttttcttcatctttagtctggacaacttcagacccttcagctccatgttatcaatcttcccttttgat 115  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||    
T  23002045 ttttcttcatctcctatgctggttttccaatcttttcttcatctttagtctggacaacttcagacccttcaactccttgtcatcaatcttccgttttgat 23002144  T
Q  116 gcttttaaataacctgctgactttttgccccgtttcttaggggg-tcactttgatgctctactagaggaagttg---tggccttctcaatgattcttgtt 211  Q
    |||||||||||   ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| || ||   ||||||||||||||||||||| |    
T  23002145 gcttttaaatacgttgctgactttttgccccatttcttagggggctcactttgatgctctactagagg-agctgccttggccttctcaatgattcttgct 23002243  T
Q  212 gatattctt 220  Q
    ||| |||||    
T  23002244 gatcttctt 23002252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 23786345 - 23786138
Alignment:
Q  16 ttttcttcatctcctttgctggttttcgaatcttttcttcatctttagtctggacaacttcagacccttcagctccatgttatcaatcttcccttttgat 115  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||    
T  23786345 ttttcttcatctcctatgctggttttccaatcttttcttcatctttagtctggacaacttcagacccttcaactccttgtcatcaatcttccgttttgat 23786246  T
Q  116 gcttttaaataacctgctgactttttgccccgtttcttaggggg-tcactttgatgctctactagaggaagttg---tggccttctcaatgattcttgtt 211  Q
    |||||||||||   ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| || ||   ||||||||||||||||||||| |    
T  23786245 gcttttaaatacgttgctgactttttgccccatttcttagggggctcactttgatgctctactagagg-agctgccttggccttctcaatgattcttgct 23786147  T
Q  212 gatattctt 220  Q
    ||| |||||    
T  23786146 gatcttctt 23786138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 18155835 - 18156044
Alignment:
Q  16 ttttcttcatctcctttgctggttttcgaatcttttcttcatctttagtctggacaacttcagacccttcagctccatgttatcaatcttcccttttgat 115  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||    
T  18155835 ttttcttcatctcctttgctggttttccaaccttttcttcatctttagtctggacaacttcagacccttcaactccttgtcatcaatcttccgttttgat 18155934  T
Q  116 --gcttttaaataacctgctgactttttgccccgtttcttaggggg-tcactttgatgctctactagaggaagttg---tggccttctcaatgattcttg 209  Q
      ||||||||||||  |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| || ||   ||||||| |||||||||||||    
T  18155935 gcgcttttaaataagttgctgactttttgccctgtttcttagggggctcactttgatgctctactagagg-agctgccttggccttgtcaatgattcttg 18156033  T
Q  210 ttgatattctt 220  Q
    ||||| |||||    
T  18156034 ttgatcttctt 18156044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 18155520 - 18155311
Alignment:
Q  16 ttttcttcatctcctttgctggttttcgaatcttttcttcatctttagtctggacaacttcagacccttcagctccatgttatcaatcttcccttttgat 115  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||    
T  18155520 ttttcttcatctcctttgctggttttccaaccttttcttcatctttagtctggacaacttcagacccttcaactccttgtcatcaatcttccgttttgat 18155421  T
Q  116 --gcttttaaataacctgctgactttttgccccgtttcttaggggg-tcactttgatgctctactagaggaagttg---tggccttctcaatgattcttg 209  Q
      |||||||||||| ||| |||||||||||   ||||||||||||| ||||||||||||||||||||| | || ||   |||||||||||||||||||||    
T  18155420 gcgcttttaaataagctgatgactttttgcgttgtttcttagggggctcactttgatgctctactaga-gcagctgccttggccttctcaatgattcttg 18155322  T
Q  210 ttgatattctt 220  Q
    ||||| |||||    
T  18155321 ttgatcttctt 18155311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 21084877 - 21085046
Alignment:
Q  16 ttttcttcatctcctttgctggttttcgaatcttttcttcatctttagtctggacaacttcagacccttcagct-ccatgttatcaatcttcccttttga 114  Q
    |||||||| |||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |||||| |  ||| ||||||||| ||||||||    
T  21084877 ttttcttcgtctcctttgccggttttcgaatcctttcttcatcattagtctggacaacttcagacccctcagctgctttgtcatcaatctttccttttga 21084976  T
Q  115 tgcttttaaataacctgctgactttttgccccgtttcttaggggg-tcactttgatgctctactagagga 183  Q
    |||||||||||    |||||||||||||||||||||||||||||| ||||||| |||||| |||||||||    
T  21084977 tgcttttaaatttgatgctgactttttgccccgtttcttagggggttcactttcatgctccactagagga 21085046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 21039826 - 21039995
Alignment:
Q  16 ttttcttcatctcctttgctggttttcgaatcttttcttcatctttagtctggacaacttcagacccttcagct-ccatgttatcaatcttcccttttga 114  Q
    |||||||| |||||||||| |||||||||||| |||||||||| ||  ||||||||||||||||||| |||||| |  ||| ||||||||| ||||||||    
T  21039826 ttttcttcgtctcctttgccggttttcgaatcctttcttcatcatttttctggacaacttcagacccctcagctgctttgtcatcaatctttccttttga 21039925  T
Q  115 tgcttttaaataacctgctgactttttgccccgtttcttaggggg-tcactttgatgctctactagagga 183  Q
    |||||||||||    |||||||||||||||||||||||||||||| ||||||| |||||| |||||||||    
T  21039926 tgcttttaaatttgatgctgactttttgccccgtttcttagggggttcactttcatgctccactagagga 21039995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 21062999 - 21063086
Alignment:
Q  97 atcaatcttcccttttgatgcttttaaataacctgctgactttttgccccgtttcttaggggg-tcactttgatgctctactagagga 183  Q
    ||||||||||||||| |||||||||||||    |||||||||||||||||||||||||||||| ||||||| |||||| |||||||||    
T  21062999 atcaatcttccctttagatgcttttaaatctgatgctgactttttgccccgtttcttagggggttcactttcatgctccactagagga 21063086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0339 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 750 - 655
Alignment:
Q  25 tctcctttgctggttttcgaatcttttcttcatctttagtctggacaacttcagacccttcagctcc-atgttatcaatcttcccttttgatgctt 119  Q
    |||||| |||||| | || | ||||||||||||| ||| |||| |||||| ||||||| ||||||||  ||| |||||| ||| ||||||||||||    
T  750 tctcctctgctggctgtccagtcttttcttcatccttattctgaacaactccagacccctcagctcctttgtcatcaatattctcttttgatgctt 655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0339; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 9006 - 9101
Alignment:
Q  25 tctcctttgctggttttcgaatcttttcttcatctttagtctggacaacttcagacccttcagctcc-atgttatcaatcttcccttttgatgctt 119  Q
    |||||| |||||| | || | ||||||||||||| ||| |||| |||||| ||||||| ||||||||  ||| |||||| ||| ||||||||||||    
T  9006 tctcctctgctggctgtccagtcttttcttcatccttattctgaacaactccagacccctcagctcctttgtcatcaatattctcttttgatgctt 9101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 47271525 - 47271430
Alignment:
Q  25 tctcctttgctggttttcgaatcttttcttcatctttagtctggacaacttcagacccttcagctcc-atgttatcaatcttcccttttgatgctt 119  Q
    |||||| |||||| | || | ||||||||||||| ||| |||| |||||| ||||||| ||||||||  ||| |||||| ||| ||||||||||||    
T  47271525 tctcctctgctggctgtccagtcttttcttcatccttattctgaacaactccagacccctcagctcctttgtcatcaatattctcttttgatgctt 47271430  T

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