View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17291_low_1 (Length: 405)
Name: NF17291_low_1
Description: NF17291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17291_low_1 |
 | |
|
| [»] scaffold0006 (1 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] scaffold0182 (1 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
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|
Alignment Details
Target: scaffold0006 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 405
Target Start/End: Complemental strand, 276811 - 276413
Alignment:
| Q |
7 |
ctctgagagtttcgaatggttgatgaagacatggcttaaggcaatgagtgggaaacctccaaatgcaatgataactgaccaagacagagcaatgaaagtg |
106 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
276811 |
ctctgagagtttcaaatggttgatgaaaacatggcttaaggcaatgggtgggaaacctccaaatgcaatgataactgaccaagacagagcaatgaaagtg |
276712 |
T |
|
| Q |
107 |
gctattgaagaggtatttccaaatacccgacatcgtttttgtctttggcatatacttagaaaggtgcctgagaagcttggtcatgtaataagaaataatg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
276711 |
gctattgaagaggtatttccaaatacccaacatcgtttttgtctttggcatatacttagaaaggtgcctgagaagcttggtcatgtaataagaaataatg |
276612 |
T |
|
| Q |
207 |
aagatttcatgggatattttgacgcatgtatatacaagtctctgtcaatacaacagtttgaagttaattgggcagaaatggtagagaaatttcaactatc |
306 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
276611 |
aagatttcatgggatattttgatgcatgcatatacaagtctctgtcaatacaacagtttgaagttaattgggcagaaatggtagagaaatttcaactatc |
276512 |
T |
|
| Q |
307 |
aaactcagaggatgggtggattcagtctttatatgaagaacgtaaacattgggttcctgtttacatgaaagatacctttttcggtggcatgtcaacaac |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
276511 |
aaactcagaggatgggtggattcagtctttatatgaagaacgtaaacattgggttcctgtttacatgaaagatacctttttcggtggcatgtcaacaac |
276413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 405
Target Start/End: Complemental strand, 26397416 - 26397018
Alignment:
| Q |
7 |
ctctgagagtttcgaatggttgatgaagacatggcttaaggcaatgagtgggaaacctccaaatgcaatgataactgaccaagacagagcaatgaaagtg |
106 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26397416 |
ctctgagagtttcaaatggttgatgaaaacatggcttaaggcaatgggtgggaaacctccaaatgcaatgataactgaccaagacagagcaatgaaagtg |
26397317 |
T |
|
| Q |
107 |
gctattgaagaggtatttccaaatacccgacatcgtttttgtctttggcatatacttagaaaggtgcctgagaagcttggtcatgtaataagaaataatg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26397316 |
gctattgaagaggtatttccaaatacccaacatcgtttttgtctttggcatatacttagaaaggtgcctgagaagcttggtcatgtaataagaaataatg |
26397217 |
T |
|
| Q |
207 |
aagatttcatgggatattttgacgcatgtatatacaagtctctgtcaatacaacagtttgaagttaattgggcagaaatggtagagaaatttcaactatc |
306 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26397216 |
aagatttcatgggatattttgatgcatgcatatacaagtctctgtcaatacaacagtttgaagttaattgggcagaaatggtagagaaatttcaactatc |
26397117 |
T |
|
| Q |
307 |
aaactcagaggatgggtggattcagtctttatatgaagaacgtaaacattgggttcctgtttacatgaaagatacctttttcggtggcatgtcaacaac |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26397116 |
aaactcagaggatgggtggattcagtctttatatgaagaacgtaaacattgggttcctgtttacatgaaagatacctttttcggtggcatgtcaacaac |
26397018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 25829957 - 25829782
Alignment:
| Q |
23 |
tggttgatgaagacatggcttaaggcaatgagtgggaaacctccaaatgcaatgataactgaccaagacagagcaatgaaagtggctattgaagaggtat |
122 |
Q |
| |
|
||||||||||| ||| |||| | |||||| | ||||||||||||| |||||| |||||| | ||||| ||||||||||||||||| ||| |||| | |
|
|
| T |
25829957 |
tggttgatgaaaacaaggctcagagcaatgggcgggaaacctccaactgcaataataacttatcaagatagagcaatgaaagtggcgattagttaggtgt |
25829858 |
T |
|
| Q |
123 |
ttccaaatacccgacatcgtttttgtctttggcatatacttagaaaggtgcctgagaagcttggtcatgtaataag |
198 |
Q |
| |
|
||||||| || ||||| || |||||||||||||||||||| |||||||| | |||||||||||||||||||||||| |
|
|
| T |
25829857 |
ttccaaacactcgacaccgattttgtctttggcatatactaagaaaggttcatgagaagcttggtcatgtaataag |
25829782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 19219868 - 19219724
Alignment:
| Q |
59 |
aaacctccaaatgcaatgataactgaccaagacagagcaatgaaagtggctattgaagaggtatttccaaatacccgacatcgtttttgtctttggcata |
158 |
Q |
| |
|
|||||||||| |||||| ||| ||| ||||| |||||||| |||||| |||| |||| |||||||||| || | ||| | |||||||||||||||| |
|
|
| T |
19219868 |
aaacctccaattgcaataatatgtgatcaagatagagcaataaaagtgactatcagagagatatttccaaacactcaacactgattttgtctttggcata |
19219769 |
T |
|
| Q |
159 |
tacttagaaaggtgcctgagaagcttggtcatgtaataagaaata |
203 |
Q |
| |
|
|||||||||| || | ||||||| || |||||||| ||||||||| |
|
|
| T |
19219768 |
tacttagaaatgttcttgagaagttttgtcatgtattaagaaata |
19219724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 19217623 - 19217538
Alignment:
| Q |
116 |
gaggtatttccaaatacccgacatcgtttttgtctttggcatatacttagaaaggtgcctgagaagcttggtcatgtaataagaaa |
201 |
Q |
| |
|
|||||||||||||| || |||||| | |||| ||||||| ||||||||||||| || | ||||||| || |||||||| ||||||| |
|
|
| T |
19217623 |
gaggtatttccaaacactcgacattgattttatctttggtatatacttagaaatgttcttgagaagtttagtcatgtattaagaaa |
19217538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 7 - 405
Target Start/End: Complemental strand, 29701 - 29303
Alignment:
| Q |
7 |
ctctgagagtttcgaatggttgatgaagacatggcttaaggcaatgagtgggaaacctccaaatgcaatgataactgaccaagacagagcaatgaaagtg |
106 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29701 |
ctctgagagtttcgaatggttgatgaaaacatggcttaaggcaatatgtgggaaacctccaaatccaatgataacttaccaagacagagcaatgaaagtg |
29602 |
T |
|
| Q |
107 |
gctattgaagaggtatttccaaatacccgacatcgtttttgtctttggcatatacttagaaaggtgcctgagaagcttggtcatgtaataagaaataatg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29601 |
gctattgaagaggtatttccaaatacccgacatcgtttttgtctttggcatatacttagaaaggtgcctgagaagcttggtcatgtaataagaaataatg |
29502 |
T |
|
| Q |
207 |
aagatttcatgggatattttgacgcatgtatatacaagtctctgtcaatacaacagtttgaagttaattgggcagaaatggtagagaaatttcaactatc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29501 |
aagatttcatgggatattttgacgcatgcatatacaagtctctgtcaatacaacagtttgaagttaattgggcagaaatggtagagaaatttcaactatc |
29402 |
T |
|
| Q |
307 |
aaactcagaggatgggtggattcagtctttatatgaagaacgtaaacattgggttcctgtttacatgaaagatacctttttcggtggcatgtcaacaac |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29401 |
aaactcagaggatgggtggattcagtctttatatgaagaacgtaaacattgggttcctgtttacatgaaagatacctttttcgctggcatgtcaacaac |
29303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 22 - 405
Target Start/End: Complemental strand, 20646135 - 20645759
Alignment:
| Q |
22 |
atggttgatgaagacatggcttaaggcaatgagtgggaaacctccaaatgcaatgataactgaccaagacagagcaatgaaagtggctattgaagaggta |
121 |
Q |
| |
|
||||||| |||| || ||||||| | ||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||| | ||||| | | ||| |
|
|
| T |
20646135 |
atggttggtgaaaacttggcttaggacaatgggtgggaagcctccaaatgcaataataactgaccaagacagagcaatgaaagtagttattgcaaatgta |
20646036 |
T |
|
| Q |
122 |
tttccaaatacccgacatcgtttttgtctttggcatatacttagaaaggtgcctgagaagcttggtcatgtaataagaaataatgaagatttcatgggat |
221 |
Q |
| |
|
|| |||||| | ||||||||||||||||||||||||||||||||||| |||||||| || || |||||||| ||||| | ||||| ||||||||||||| |
|
|
| T |
20646035 |
tt-ccaaatgctcgacatcgtttttgtctttggcatatacttagaaaagtgcctgaaaaactcggtcatgttataagtgaaaatgatgatttcatgggat |
20645937 |
T |
|
| Q |
222 |
attttgacgcatgtatatacaagtctctgtcaatacaacagtttgaagttaattgggcagaaatggtagagaaatttcaactatcaaactcagaggatgg |
321 |
Q |
| |
|
||||| || |||| || |||||||| | ||||||||||||||| ||| ||| || | |||||||||||| |||||||| || || ||||||| |
|
|
| T |
20645936 |
attttaactcatgcatttacaagtcccgttcaatacaacagtttcaagataaatgagaagaaatggtagaaaaatttcagct------gtctgaggatgt |
20645843 |
T |
|
| Q |
322 |
gtggattcagtctttatatgaagaacgtaaacattgggttcctgtttacatgaaagatacctttttcggtggcatgtcaacaac |
405 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
20645842 |
atggattcagtcgttatatgaagaacgtgaacattgaattcctgtttacatgaaagatacattttttggtggtatgtcaacaac |
20645759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 22 - 405
Target Start/End: Original strand, 56108644 - 56109021
Alignment:
| Q |
22 |
atggttgatgaagacatggcttaaggcaatgagtgggaaacctccaaatgcaatgataactgaccaagacagagcaatgaaagtggctattgaagaggta |
121 |
Q |
| |
|
|||||||||||| | |||||||| |||||| |||| ||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
56108644 |
atggttgatgaaaatatggcttagagcaatgggtggaaaacctccaaatgcaatcataactgatcaagatagagcaatgaaagaggctattaaagaggta |
56108743 |
T |
|
| Q |
122 |
tttccaaatacccgacatcgtttttgtctttggcatatacttagaaaggtgcctgagaagcttggtcatgtaataagaaataatgaagatttcatgggat |
221 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || | ||||| |||||| ||| |
|
|
| T |
56108744 |
tttccaaattctcgacatcgattttgtctttggcatatacttagaaaggtgcctgagaagcttagtcatgttttaagagatgacgaagacttcatgagat |
56108843 |
T |
|
| Q |
222 |
attttgacgcatgtatatacaagtctctgtcaatacaacagtttgaagttaattgggcagaaatggtagagaaatttcaactatcaaactcagaggatgg |
321 |
Q |
| |
|
|| | || ||| ||||| |||||| ||||| |||||| ||||||| ||| ||| |||||||| || |||||| | |||| | || |||| |
|
|
| T |
56108844 |
atctcaacatatgcatatataagtcttggtcaaaacaacaatttgaagataaatggcatgaaatggtggaaaaatttgatctat-----ttgga-gatga |
56108937 |
T |
|
| Q |
322 |
gtggattcagtctttatatgaagaacgtaaacattgggttcctgtttacatgaaagatacctttttcggtggcatgtcaacaac |
405 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||||| |||||||||| |
|
|
| T |
56108938 |
ttggattcactctttatatgaagaacgtgaacattgggttcctgtttacatgaatgatacattttttggtggcttgtcaacaac |
56109021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 22 - 405
Target Start/End: Original strand, 26014411 - 26014788
Alignment:
| Q |
22 |
atggttgatgaagacatggcttaaggcaatgagtgggaaacctccaaatgcaatgataactgaccaagacagagcaatgaaagtggctattgaagaggta |
121 |
Q |
| |
|
|||||||||||| | |||||||| |||||| |||| ||||||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
26014411 |
atggttgatgaaaatatggcttagagcaatgggtggaaaacctccaaatgcaatcataactgatcaagatagagcaatgaaataggctattaaagaggta |
26014510 |
T |
|
| Q |
122 |
tttccaaatacccgacatcgtttttgtctttggcatatacttagaaaggtgcctgagaagcttggtcatgtaataagaaataatgaagatttcatgggat |
221 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || | ||||| |||||| ||| |
|
|
| T |
26014511 |
tttccaaattctcgacatcgattttgtctttggcatatacttagaaaggtgcctgagaagcttagtcatgttttaagagatgacgaagacttcatgagat |
26014610 |
T |
|
| Q |
222 |
attttgacgcatgtatatacaagtctctgtcaatacaacagtttgaagttaattgggcagaaatggtagagaaatttcaactatcaaactcagaggatgg |
321 |
Q |
| |
|
|| | || ||| ||||| |||||| ||||| |||||| ||||||| ||| ||| |||||||| || |||||| | |||| | || |||| |
|
|
| T |
26014611 |
atctcaacatatgcatatataagtcttggtcaaaacaacaatttgaagataaatggcatgaaatggtggaaaaatttgatctat-----ttgga-gatga |
26014704 |
T |
|
| Q |
322 |
gtggattcagtctttatatgaagaacgtaaacattgggttcctgtttacatgaaagatacctttttcggtggcatgtcaacaac |
405 |
Q |
| |
|
|| ||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||||| |||||||||| |
|
|
| T |
26014705 |
ttgaattcactctttatatgaagaacgtgaacattgggttcctgtttacatgaatgatacattttttggtggcttgtcaacaac |
26014788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 22 - 269
Target Start/End: Original strand, 6965916 - 6966166
Alignment:
| Q |
22 |
atggttgatgaagacatggcttaaggcaatgagtgggaaacctccaaatgcaatgataactgaccaagacagagcaatgaaagtggctattgaagag--- |
118 |
Q |
| |
|
|||||||||||| | |||||||| |||||| |||| ||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||| ||||| |
|
|
| T |
6965916 |
atggttgatgaaaatatggcttagagcaatgggtggaaaacctccaaatgcaatcataactgatcaagatagagcaatgaaagaggctattaaagaggta |
6966015 |
T |
|
| Q |
119 |
gtatttccaaatacccgacatcgtttttgtctttggcatatacttagaaaggtgcctgagaagcttggtcatgtaataagaaataatgaagatttcatgg |
218 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| || | ||||| |||||| |
|
|
| T |
6966016 |
gtatttccaaattcttgacatcgattttgtctttggcatatacttagagaggtgcctgagaagcttagtcatgttttaagagatgacgaagacttcatga |
6966115 |
T |
|
| Q |
219 |
gatattttgacgcatgtatatacaagtctctgtcaatacaacagtttgaag |
269 |
Q |
| |
|
||||| | || ||| ||||| |||||| ||||| |||||| ||||||| |
|
|
| T |
6966116 |
gatatctcaacatatgcatatataagtcttggtcaaaacaacaatttgaag |
6966166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 6967394 - 6967454
Alignment:
| Q |
345 |
aacgtaaacattgggttcctgtttacatgaaagatacctttttcggtggcatgtcaacaac |
405 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||||| ||||| |||||| |||||||||| |
|
|
| T |
6967394 |
aacgtgaacattgggttcctatttacatgaatgatacattttttggtggcttgtcaacaac |
6967454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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