View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17291_low_2 (Length: 320)
Name: NF17291_low_2
Description: NF17291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17291_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 23001189 - 23001375
Alignment:
| Q |
10 |
attatactaaatcggctgatctaaataatttgagnnnnnnnntgaagcttgtgttgttcaaagcattggatcaagaattctattgataggcattgtccgt |
109 |
Q |
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| T |
23001189 |
attatactaaatcggctgatctaaataatttcagaaaaaaa-tgaagcttgtgttgttcaaagcattggatcaagaattctattgataggaattgtccgt |
23001287 |
T |
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| Q |
110 |
caaacacattgcaagtcaaattggatcggtcaaagttgatgtttagattaatttatgaaatcgtcaaatagatcgaaggattacttaa |
197 |
Q |
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| T |
23001288 |
caaacacattgcaagtcaaattggatcggtcaaagttgatgtttagattaatttatgaaatcatcaaatagatcgaaggattacttaa |
23001375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 23787201 - 23787015
Alignment:
| Q |
10 |
attatactaaatcggctgatctaaataatttgagnnnnnnnntgaagcttgtgttgttcaaagcattggatcaagaattctattgataggcattgtccgt |
109 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23787201 |
attatactaaatcggctgatctaaataatttcagaaaaaaa-tgaagcttgtgttgttcaaagcattggatcaagaattctattgataggaattgtccgt |
23787103 |
T |
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| Q |
110 |
caaacacattgcaagtcaaattggatcggtcaaagttgatgtttagattaatttatgaaatcgtcaaatagatcgaaggattacttaa |
197 |
Q |
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| T |
23787102 |
caaacacattgcaagtcaaattggatcggtcaaagttgatgtttagattaatttatgaaatcatcaaatagatcgaaggattacttaa |
23787015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 144 - 305
Target Start/End: Original strand, 18155083 - 18155246
Alignment:
| Q |
144 |
gttgatgtttagattaatttatgaaatcgtcaaatagatcgaaggattacttaaccgatatatagtgatagctgcattttccattgtcat--attttgta |
241 |
Q |
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| T |
18155083 |
gttgatgttcagattagtctatgaaatcgtctaatagatcaaaggattacttaatcgatatatagtgatggctgcattttccattgtcataaattttgta |
18155182 |
T |
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| Q |
242 |
aaagattacatatttttcaatccaatttgtttaatagcatgcgaaaacagattgtcaagataag |
305 |
Q |
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| T |
18155183 |
aaagattacatatttttcaatccaatttgtttaatacaatgcgaaaacagattgccaagataag |
18155246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 223 - 305
Target Start/End: Original strand, 23001376 - 23001458
Alignment:
| Q |
223 |
tccattgtcatattttgtaaaagattacatatttttcaatccaatttgtttaatagcatgcgaaaacagattgtcaagataag |
305 |
Q |
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| T |
23001376 |
tccattgtcatattttgtaaaagattacatatttttcaatccaatttgtttaatagcatgcgaaaacagattgtcaagataag |
23001458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 23787014 - 23786932
Alignment:
| Q |
223 |
tccattgtcatattttgtaaaagattacatatttttcaatccaatttgtttaatagcatgcgaaaacagattgtcaagataag |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23787014 |
tccattgtcatattttgtaaaagattacatatttttcaatccaatttgtttaatagcatgcgaaaacagattgtcaagataag |
23786932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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