View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17291_low_3 (Length: 290)
Name: NF17291_low_3
Description: NF17291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17291_low_3 |
 | |
|
| [»] chr6 (9 HSPs) |
| |
|
| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 27878739 - 27879032
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27878739 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
27878838 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaa--act |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27878839 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacact |
27878938 |
T |
|
| Q |
199 |
aacacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactattctactaagaacaagtagttgttgtgtt |
290 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27878939 |
aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagttgttgtgtt |
27879032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 1234988 - 1234725
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1234988 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
1234889 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1234888 |
agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaa |
1234789 |
T |
|
| Q |
201 |
cacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
1234788 |
cacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
1234725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 26976161 - 26976424
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26976161 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccaaggggcaagagt |
26976260 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26976261 |
agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaa |
26976360 |
T |
|
| Q |
201 |
cacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
26976361 |
cacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
26976424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 27874020 - 27874283
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27874020 |
acgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggaaaaaaccacggggcaagagt |
27874119 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874120 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
27874219 |
T |
|
| Q |
201 |
cacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| ||||||||||||| |||||||||| |
|
|
| T |
27874220 |
cacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactat |
27874283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 18968164 - 18967912
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18968164 |
acgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
18968065 |
T |
|
| Q |
101 |
agagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacta |
199 |
Q |
| |
|
||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| ||||| | ||||||| | |||||||||||||| ||| |
|
|
| T |
18968064 |
agaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattagc-ctctctcat-gaaataggagaatactaac-- |
18967969 |
T |
|
| Q |
200 |
acacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcact |
260 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| ||| |||||||||||||||||| |
|
|
| T |
18967968 |
------actaggagaaacctcacaagagaaactatatttcctctttatatttttcctctcact |
18967912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 193
Target Start/End: Complemental strand, 30986795 - 30986603
Alignment:
| Q |
5 |
agctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaa---cccctcaacaaataaggggaaaaaa--ccacggggcaagag |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
30986795 |
agctaaaataagagacgagaaaagaggaactgaacgcacaatattt-acgtggaaagtacccctcaacaaataaggaaaaaaaaaaccacggggcaagag |
30986697 |
T |
|
| Q |
100 |
tagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac |
193 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
30986696 |
tagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaatac |
30986603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 30966923 - 30966747
Alignment:
| Q |
17 |
agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagagtagagaactttcacta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||| ||||||||||||||||||||||||||||| |
|
|
| T |
30966923 |
agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcacta |
30966825 |
T |
|
| Q |
116 |
agtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac |
193 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
30966824 |
agtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaatac |
30966747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 21966816 - 21966677
Alignment:
| Q |
21 |
gagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtgg |
120 |
Q |
| |
|
||||||||||||||| |||| | ||||||| | ||||||||||||||| |||||| |||||||| | | ||||||||||||||||||||||||||| ||| |
|
|
| T |
21966816 |
gagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataaagggaaaaatc-atggggcaagagtagagaactttcactaaatgg |
21966719 |
T |
|
| Q |
121 |
aagaaattacaggacctctctctaaatacaaggagagtacaa |
162 |
Q |
| |
|
||||||||| | ||||||||||||| | ||| |||||||||| |
|
|
| T |
21966718 |
aagaaattataagacctctctctaatttcaaagagagtacaa |
21966677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 23012531 - 23012667
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaa-gaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagag |
99 |
Q |
| |
|
||||| ||||||||||||||||||||| || ||| |||||||||| ||||| |||||||||| | ||| || |||||||||||| ||| ||| |||||| |
|
|
| T |
23012531 |
acgcaactaaaataagagacgagaaaaagaagaattgaacacacattattt-acgtggaaactcgtcacaaattaaggggaaaaa-ccatggg-caagag |
23012627 |
T |
|
| Q |
100 |
tagagaactttcactaagtggaagaaattacaggacctct |
139 |
Q |
| |
|
|||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
23012628 |
tagagaactttcactaagtgagagaaatttcaagacctct |
23012667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 42266190 - 42265927
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266190 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
42266091 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266090 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
42265991 |
T |
|
| Q |
201 |
cacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| ||||||||||||| |||||||||| |
|
|
| T |
42265990 |
cacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactat |
42265927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 42270909 - 42270646
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270909 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
42270810 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270809 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
42270710 |
T |
|
| Q |
201 |
cacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| ||||||||||||| |||||||||| |
|
|
| T |
42270709 |
cacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactat |
42270646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 30945507 - 30945799
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
30945507 |
acgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg-aaaaaatcacggggcaagagt |
30945605 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaa--act |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30945606 |
agagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacact |
30945705 |
T |
|
| Q |
199 |
aacacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactattctactaagaacaagtagttgttgtgtt |
290 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30945706 |
aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagttgttgtgtt |
30945799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 30950213 - 30950505
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30950213 |
acgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg-aaaaaaccacggggcaagagt |
30950311 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaa--act |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30950312 |
agagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccactctctcttataaataggagaatacaaacact |
30950411 |
T |
|
| Q |
199 |
aacacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactattctactaagaacaagtagttgttgtgtt |
290 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30950412 |
aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagttgttgtgtt |
30950505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 24520055 - 24520318
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520055 |
acgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
24520154 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24520155 |
agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaa |
24520254 |
T |
|
| Q |
201 |
cacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
24520255 |
cacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
24520318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 48701851 - 48702114
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701851 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
48701950 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48701951 |
agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaa |
48702050 |
T |
|
| Q |
201 |
cacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
48702051 |
cacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
48702114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 48697161 - 48697425
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa-aaccacggggcaagag |
99 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48697161 |
acgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaaccacggggcaagag |
48697260 |
T |
|
| Q |
100 |
tagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacta |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48697261 |
tagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaacta |
48697360 |
T |
|
| Q |
200 |
acacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
48697361 |
acacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
48697425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 10427567 - 10427315
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || ||| |
|
|
| T |
10427567 |
acgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaacaaataaggggaaaaaactacggggaaaaagt |
10427468 |
T |
|
| Q |
101 |
agagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacta |
199 |
Q |
| |
|
||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||| |
|
|
| T |
10427467 |
agataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctctt-gaaataggagaatactaac-- |
10427372 |
T |
|
| Q |
200 |
acacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcact |
260 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
10427371 |
------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
10427315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 48783007 - 48782850
Alignment:
| Q |
8 |
taaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaac |
107 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||| ||||||||| |||||||||||| |||||||| || |||| ||||| |
|
|
| T |
48783007 |
taaaataagaaacgagaaaacaggaactgaacacacaatattt-acgtggaaatttctcaacaaataaagggaaaaa--catgggg---------agaac |
48782920 |
T |
|
| Q |
108 |
tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat |
179 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
48782919 |
tttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat |
48782850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 223
Target Start/End: Complemental strand, 1979375 - 1979253
Alignment:
| Q |
95 |
aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca |
194 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||| ||||||||| |||| ||||||| ||| | |||||||||||||||||||| |||||||| |
|
|
| T |
1979375 |
aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaat--- |
1979281 |
T |
|
| Q |
195 |
aactaacacaaactaggagaaacctcaca |
223 |
Q |
| |
|
|||| ||| ||| ||||||||||||||| |
|
|
| T |
1979280 |
-actagcactaaccaggagaaacctcaca |
1979253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 17248112 - 17248015
Alignment:
| Q |
24 |
aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa |
122 |
Q |
| |
|
||||||| |||| || ||||||||||| || |||||| |||| || |||||||||||||||||||| || ||||||| |||||||||| ||||||||| |
|
|
| T |
17248112 |
aaaagagaaactaaatacacaatattt-acatggaaatcccttaataaataaggggaaaaaaccaccggataagagtatagaactttcattaagtggaa |
17248015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 1979604 - 1979567
Alignment:
| Q |
37 |
aacacacaatattttacgtggaaacccctcaacaaataa |
75 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1979604 |
aacacacaatattt-acgtggaaacccctcaacaaataa |
1979567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 34352535 - 34352272
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352535 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
34352436 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34352435 |
agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaa |
34352336 |
T |
|
| Q |
201 |
cacaaactaggagaaacctcacaggagaaactaattttt--ctctatatttttcctctcactat |
262 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
34352335 |
cacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactat |
34352272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 266
Target Start/End: Original strand, 29585332 - 29585597
Alignment:
| Q |
3 |
gcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtag |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585332 |
gcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtag |
29585431 |
T |
|
| Q |
103 |
agaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaaca |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
29585432 |
agaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccactctctcttataaataggagaatactaactaata |
29585531 |
T |
|
| Q |
203 |
caaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactattcta |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
29585532 |
caaactaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactactcta |
29585597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 34360243 - 34359980
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34360243 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
34360144 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34360143 |
agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaa |
34360044 |
T |
|
| Q |
201 |
cacaaactaggagaaacctcacaggagaaactaattttt--ctctatatttttcctctcactat |
262 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
34360043 |
cacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactat |
34359980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 41718697 - 41718434
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718697 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
41718598 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41718597 |
agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaa |
41718498 |
T |
|
| Q |
201 |
cacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
41718497 |
cacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
41718434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 41723423 - 41723160
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723423 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
41723324 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41723323 |
agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaa |
41723224 |
T |
|
| Q |
201 |
cacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
41723223 |
cacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
41723160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 5823305 - 5823568
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823305 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
5823404 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5823405 |
agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaa |
5823504 |
T |
|
| Q |
201 |
cacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
5823505 |
cacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
5823568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 54546170 - 54545878
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54546170 |
acgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaacaaataaggggaaaaaaccacggggctagagt |
54546072 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaa--act |
198 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
54546071 |
agagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacact |
54545972 |
T |
|
| Q |
199 |
aacacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactattctactaagaacaagtagttgttgtgtt |
290 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54545971 |
aacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagtagttgttgtgtt |
54545878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 5818543 - 5818806
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5818543 |
acgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaactaataaggggaaaaaaccacggggcaagagt |
5818642 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5818643 |
agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaa |
5818742 |
T |
|
| Q |
201 |
cacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
5818743 |
cacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
5818806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 2817293 - 2817510
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
2817293 |
acgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-gggaaaaaaccacagggcaagagt |
2817391 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca--ctctctcttataaataggagaatacaaact |
198 |
Q |
| |
|
| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| |
|
|
| T |
2817392 |
aaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccactctctctcttataaataggagaatactaact |
2817491 |
T |
|
| Q |
199 |
aacacaaactaggagaaac |
217 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
2817492 |
aatacaaactaggagaaac |
2817510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 24659169 - 24659287
Alignment:
| Q |
4 |
cagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtaga |
103 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24659169 |
cagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt--a |
24659266 |
T |
|
| Q |
104 |
gaactttcactaagtggaaga |
124 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
24659267 |
gaactttcactaagtggaaga |
24659287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 4579338 - 4579254
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
85 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4579338 |
acgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
4579254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 31204797 - 31204950
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacgg-ggcaagag |
99 |
Q |
| |
|
|||||| ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||| || |
|
|
| T |
31204797 |
acgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaataagaggaaaaaatcacggaggcaatag |
31204894 |
T |
|
| Q |
100 |
tagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag |
157 |
Q |
| |
|
||||||||||||||||||||| | |||||||| || ||||||||||| |||||||| |
|
|
| T |
31204895 |
tagagaactttcactaagtgggaaaaattacaaaac--ctctctaaatataaggagag |
31204950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 35977258 - 35977103
Alignment:
| Q |
9 |
aaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtaga-gaac |
107 |
Q |
| |
|
|||||||||| |||||||||| || |||||| ||||||||| |||| ||| || |||||| ||| |||||||| ||| |||||||||| | || |
|
|
| T |
35977258 |
aaaataagaggtgagaaaagagaaattgaacaaacaatattt-acgtaaaaaaccatcaacatata--gggaaaaactcacttggcaagagtaaaagagt |
35977162 |
T |
|
| Q |
108 |
tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac |
166 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
35977161 |
tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac |
35977103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 124 - 260
Target Start/End: Original strand, 24671173 - 24671301
Alignment:
| Q |
124 |
aaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcaca |
223 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
24671173 |
aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaac--------actaggagaaacctcaca |
24671262 |
T |
|
| Q |
224 |
ggagaaactaatttt--tctctatatttttcctctcact |
260 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
24671263 |
ggagaaactatatttcctctctatatttttcctctcact |
24671301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 260
Target Start/End: Complemental strand, 4579241 - 4579126
Alignment:
| Q |
137 |
tctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatt |
236 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| | |||||||||||||| |||| ||| ||||||||||||||||||||||| | |
|
|
| T |
4579241 |
tctctctaaatacaaggagagacaaattacc-ctctctcgtg-aaataggagaatactaact--------ctatgagaaacctcacaggagaaactatat |
4579152 |
T |
|
| Q |
237 |
tt--tctctatatttttcctctcact |
260 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
4579151 |
ttcctctctatatttttcctctcact |
4579126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 9439402 - 9439665
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439402 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
9439501 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9439502 |
agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaa |
9439601 |
T |
|
| Q |
201 |
cacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
9439602 |
cacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
9439665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 9444122 - 9444385
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444122 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
9444221 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9444222 |
agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaa |
9444321 |
T |
|
| Q |
201 |
cacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
9444322 |
cacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
9444385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 5198685 - 5198948
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198685 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
5198784 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5198785 |
agagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaa |
5198884 |
T |
|
| Q |
201 |
cacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
5198885 |
cacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
5198948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 10 - 258
Target Start/End: Complemental strand, 15603155 - 15602905
Alignment:
| Q |
10 |
aaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15603155 |
aaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactt |
15603056 |
T |
|
| Q |
110 |
tcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaacta |
209 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||| || |||| |||||||||||| ||| |||| ||||||||||||||| ||||||||| |||| |
|
|
| T |
15603055 |
tcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaaataggagaatactaactaacacttacta |
15602956 |
T |
|
| Q |
210 |
ggagaaacctcacaggagaaactaatttttc--tctatatttttcctctca |
258 |
Q |
| |
|
||||||||||| || | || |||||||||| |||||||||||||||||| |
|
|
| T |
15602955 |
agagaaacctcatagaaaaatctaatttttctttctatatttttcctctca |
15602905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 825766 - 825632
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagag |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
825766 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaacaaataaggggaaaaaaaccacggggcaagag |
825667 |
T |
|
| Q |
100 |
tagagaactttcactaagtggaagaaattacagga |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
825666 |
tagagaactttcactaagtggaagaaattacagga |
825632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 830422 - 830288
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagag |
99 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
830422 |
acgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaaccacggggcaagag |
830323 |
T |
|
| Q |
100 |
tagagaactttcactaagtggaagaaattacagga |
134 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
830322 |
tggagaactttcactaagtggaagaaattacagga |
830288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 28716040 - 28715816
Alignment:
| Q |
8 |
taaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaac |
107 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| |||| | |||| |||||||| |
|
|
| T |
28716040 |
taaaataagagacgacaaaagaggaattgaacacacaatattt-acgtggaaacccctcattaaataaggggaaaaa-ccacaagagaagaatagagaac |
28715943 |
T |
|
| Q |
108 |
tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaac |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | || ||||||||||||||| |||||||| | | |
|
|
| T |
28715942 |
tttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcctataaataggagaat----actaacactacc |
28715847 |
T |
|
| Q |
208 |
taggagaaacctcacaggagaaactaatttt |
238 |
Q |
| |
|
|||||||||||| ||| ||||||||| |||| |
|
|
| T |
28715846 |
taggagaaaccttacaagagaaactattttt |
28715816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 30396941 - 30397191
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||| ||| |||| ||||| |
|
|
| T |
30396941 |
acgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaacaaataagggaaaaaaatcacagggcgagagt |
30397038 |
T |
|
| Q |
101 |
agagaac-tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacta |
199 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||| |||| |||||||||||| ||||||| |||| | || ||||||||||||| ||| |
|
|
| T |
30397039 |
agagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagagacaaattacc-ctctatgtt-gaaataggagaatattaac-- |
30397134 |
T |
|
| Q |
200 |
acacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcact |
260 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
30397135 |
------actaggagaaatctcacaggagaaactatatttcctctctatattgttcctctcact |
30397191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 830291 - 830181
Alignment:
| Q |
184 |
aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctct--atatttttcctctcactattctactaagaacaagta |
279 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
830291 |
aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagta |
830192 |
T |
|
| Q |
280 |
gttgttgtgtt |
290 |
Q |
| |
|
||||||||||| |
|
|
| T |
830191 |
gttgttgtgtt |
830181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 825635 - 825525
Alignment:
| Q |
184 |
aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctct--atatttttcctctcactattctactaagaacaagta |
279 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
825635 |
aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagta |
825536 |
T |
|
| Q |
280 |
gttgttgtgtt |
290 |
Q |
| |
|
||||||||||| |
|
|
| T |
825535 |
gttgttgtgtt |
825525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 191
Target Start/End: Original strand, 13843865 - 13844014
Alignment:
| Q |
40 |
acacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctct |
139 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||| | || || |||| |||| ||||| ||||||||||||||||||||||| || |
|
|
| T |
13843865 |
acacaatattt-acgtggaaacccctcaacaaataaggagaaaaatt-ataggttaaaagtatagaattttcattaagtggaagaaattacaggacccct |
13843962 |
T |
|
| Q |
140 |
ctctaaatacaaggagagtacaattaccactctctcttataaataggagaat |
191 |
Q |
| |
|
| |||||||||| ||| || |||||||||||| | ||| |||||||||||| |
|
|
| T |
13843963 |
ttataaatacaagaagaataaaattaccactctattttaaaaataggagaat |
13844014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 193
Target Start/End: Complemental strand, 8004292 - 8004167
Alignment:
| Q |
66 |
caacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta |
165 |
Q |
| |
|
||||||||||| ||||||| | |||||| | || |||| |||||||||| | |||||||||||| | |||||||| ||||| ||| |||||||||||| |
|
|
| T |
8004292 |
caacaaataagaggaaaaa-caacggggtatgactagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaatta |
8004194 |
T |
|
| Q |
166 |
ccactctctcttataaataggagaatac |
193 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
8004193 |
-cactctctcttataaataggagaatac |
8004167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 31592950 - 31593068
Alignment:
| Q |
11 |
aataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaacttt |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||| |||||||||||| | ||||| |||||| | |||||||||| | |||||||||||||||| |
|
|
| T |
31592950 |
aataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaataaataa-gaaaaaaaaccac-agataagagtagagaacttt |
31593047 |
T |
|
| Q |
111 |
cactaagtggaagaaattaca |
131 |
Q |
| |
|
|||||| | ||||||||||| |
|
|
| T |
31593048 |
cactaaccgaaagaaattaca |
31593068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 193
Target Start/End: Original strand, 13840329 - 13840456
Alignment:
| Q |
63 |
cctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa |
162 |
Q |
| |
|
|||||||||| |||||| |||| || || ||||||||||| || ||| || |||| || |||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
13840329 |
cctcaacaaacaagggggaaaa--catggagcaagagtagaaaatttttaccaagtaaaa-aaattacaaaacctctctctaaatataaggagagtacaa |
13840425 |
T |
|
| Q |
163 |
ttaccactctctcttataaataggagaatac |
193 |
Q |
| |
|
|||| | ||||||||| ||||| ||||||| |
|
|
| T |
13840426 |
ttacaattctctcttaaaaataaaagaatac |
13840456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 42117876 - 42117769
Alignment:
| Q |
32 |
aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca |
131 |
Q |
| |
|
||||||||| ||||||||| |||| |||||| ||||| |||||||||| ||||||||| | ||| |||||| |||||||| ||| | |||||||| | |
|
|
| T |
42117876 |
aactgaacatacaatattt-acgtagaaacctctcaattaataagggga-aaaaccacgagacaaaagtagataactttcattaaacgagagaaattata |
42117779 |
T |
|
| Q |
132 |
ggacctctct |
141 |
Q |
| |
|
||||||||| |
|
|
| T |
42117778 |
agacctctct |
42117769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 16183661 - 16183913
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16183661 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
16183760 |
T |
|
| Q |
101 |
agagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacta |
199 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||| |
|
|
| T |
16183761 |
agagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctctctt-gaaataggagaatactaac-- |
16183856 |
T |
|
| Q |
200 |
acacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcact |
260 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
16183857 |
------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
16183913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 4 - 290
Target Start/End: Complemental strand, 30235306 - 30235014
Alignment:
| Q |
4 |
cagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa-ccacggggcaagagtag |
102 |
Q |
| |
|
|||||||||||| | | |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |||||||| |
|
|
| T |
30235306 |
cagctaaaataaaaaatgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaacgaataaggggaaaaaaaccacgggataagagtag |
30235208 |
T |
|
| Q |
103 |
agaactttcactaagtggaagaaattacaggacctctctc-taaatacaaggagagtacaattaccactctctcttataaataggagaatacaa--acta |
199 |
Q |
| |
|
| |||||||| ||| | ||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30235207 |
aaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattaccactctctcttataaataggagaatacaaacacta |
30235108 |
T |
|
| Q |
200 |
acacaaactaggagaaacctca-caggagaaactaatttt--tctctatatttttcctctcactattctactaagaacaagtagttgttgtgtt |
290 |
Q |
| |
|
|||| | || ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| | ||||||||||||||||||||| |
|
|
| T |
30235107 |
acactacgtaagagaaacctcataaggagaaactaatttttctctctatatttttcctctcactactctattgagaacaagtagttgttgtgtt |
30235014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 254
Target Start/End: Original strand, 8139997 - 8140236
Alignment:
| Q |
4 |
cagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtaga |
103 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||||| ||||||| |||| |||| |||| |
|
|
| T |
8139997 |
cagctaaaataagagatgagaaaagagaaactgaacgcacaatattt-atgtggaaacccctcaacaaataaggggagaaaaccatggggtaagattaga |
8140095 |
T |
|
| Q |
104 |
gaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacac |
203 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||||||| ||||||||||||| ||||||| ||||||||| |||||||||||||| | |
|
|
| T |
8140096 |
aaactttcactcagtggaagaaattataagacctctctcttaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactatt------ |
8140187 |
T |
|
| Q |
204 |
aaactaggagaaacctcacaggagaaactaatttttctctatatttttcct |
254 |
Q |
| |
|
||||||||| || |||||| |||||||| ||||||||||||||||||| |
|
|
| T |
8140188 |
--actaggagacacatcacagaagaaactatattttctctatatttttcct |
8140236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 8138490 - 8138645
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||| || || | |||||||||||| |||||| ||||||| ||||||||| ||||||| | |
|
|
| T |
8138490 |
acgcagctaaaataagagacgagaaaagaaaaacttaacacacagtaatt-atgtggaaaccccttaacaaacaaggggagaaaaccacgaggcaagatt |
8138588 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag |
157 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
8138589 |
agagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag |
8138645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 36528445 - 36528529
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac |
86 |
Q |
| |
|
||||| ||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
36528445 |
acgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacgaataaggaaaaaaaac |
36528529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 5102678 - 5102749
Alignment:
| Q |
57 |
gaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaatta |
129 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| || ||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
5102678 |
gaaaaccctcaacaaataaggggaaaaa-ccatggagcaagagtagataacttttactaagtgggagaaatta |
5102749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 27256 - 27508
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27256 |
acgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
27355 |
T |
|
| Q |
101 |
agagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacta |
199 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||||||||||||||||||||| |||||||| |||||||| ||||||| |||||| ||| |
|
|
| T |
27356 |
agagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacca-tctctctt-gaaataggtgaatactaac-- |
27451 |
T |
|
| Q |
200 |
acacaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcact |
260 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
27452 |
------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
27508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 260
Target Start/End: Complemental strand, 46191514 - 46191266
Alignment:
| Q |
3 |
gcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtag |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
46191514 |
gcagctaaaataagagacgagaaaagaggaactgaacaca--atattttacgtggaaacccctcaacaaataaggggaaaaaaccacgggacaagagtag |
46191417 |
T |
|
| Q |
103 |
agaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaac |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||| |||||||||||| |||||||| ||||||| ||||||||| |||||||||||||| ||| |
|
|
| T |
46191416 |
agaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc-ctctctctt-gaaataggagaatactaac---- |
46191323 |
T |
|
| Q |
202 |
acaaactaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcact |
260 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
46191322 |
----actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
46191266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 30697145 - 30697300
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
30697145 |
acgcagctaacataagagacgagaaaagaggaacttaacacaaaatattt-acgtggaaacccctcaacaaataaggggaaaaagccacgtggcaagagt |
30697243 |
T |
|
| Q |
101 |
agagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
30697244 |
agagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag |
30697300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 4130371 - 4130215
Alignment:
| Q |
1 |
acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt |
100 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4130371 |
acgcaactaaaataagtgacgagaaaagaggaactgaacacacaaaattt-acgtggaaatccctcaacaaataaagggaaaaaaccacggggcaagagt |
4130273 |
T |
|
| Q |
101 |
agagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag |
157 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
4130272 |
agagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagag |
4130215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 30674787 - 30674865
Alignment:
| Q |
113 |
ctaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac |
193 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||| | |||||||| ||||||| || |||||||| | ||||||||||||| |
|
|
| T |
30674787 |
ctaagtggaagaaattatacaacctctcactaaaaataaggagagaacaatta-cattctctcttgt-aataggagaatac |
30674865 |
T |
|
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