View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17291_low_6 (Length: 237)

Name: NF17291_low_6
Description: NF17291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17291_low_6
NF17291_low_6
[»] chr1 (3 HSPs)
chr1 (1-98)||(29367237-29367334)
chr1 (160-221)||(29367114-29367175)
chr1 (1-97)||(43547271-43547367)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 29367334 - 29367237
Alignment:
Q  1 ttctattattctaagaaacatatacaactaattgtaagttagtgtccagcatgcttacacaattgaagatcttgggagcttcaggacctacattgttc 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29367334 ttctattattctaagaaacatatacaactaattgtaagttagtgtccagcatgcttacacaattgaagatcttgggagcttcaggacctacattgttc 29367237  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 29367175 - 29367114
Alignment:
Q  160 gagcagcagcacattatgctctaatgatcaatacatcaccatttttcaacaacattgcttac 221  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29367175 gagcagcagcacattatgctctaatgatcgatacatcaccatttttcaacaacattgcttac 29367114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 43547367 - 43547271
Alignment:
Q  1 ttctattattctaagaaacatatacaactaattgtaagttagtgtccagcatgcttacacaattgaagatcttgggagcttcaggacctacattgtt 97  Q
    ||||| |||||  ||||||||||| |||| ||| ||||||| |||| |||||||||||||| ||||||||||||||||||||||  |||||||||||    
T  43547367 ttctactattcatagaaacatatataactcattataagttaatgtcaagcatgcttacacagttgaagatcttgggagcttcagtccctacattgtt 43547271  T

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