View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17292_high_1 (Length: 494)
Name: NF17292_high_1
Description: NF17292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17292_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 288 - 484
Target Start/End: Complemental strand, 4764188 - 4763998
Alignment:
| Q |
288 |
cagcttgtagttgctcaatttcttctgtcaagtcttcgtttgcttgtctaagacggtcactttcttcccttatagcatctgcttgcattcaaaataaaag |
387 |
Q |
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| T |
4764188 |
cagcttttagttgctcaatttccttcgtcaagtcttcgtttgcttgtctgagacggtcactttcttcccttagagcatctgcctgcattcaaaataaaag |
4764089 |
T |
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| Q |
388 |
gttgaaattgagtttgacaaacatttattcaaaaaagaacatagggacctgtttcgattgacttatttgaacttatccaatactataagcacctatg |
484 |
Q |
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| T |
4764088 |
g-tgaaattgagtttg----acagttactcacgaaagagc-tagggacctgtttggattgacttatttgaacttatccactagcataagcacctatg |
4763998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 4764327 - 4764245
Alignment:
| Q |
161 |
tcagtagttggacttaagtttttgcttgcttaagtcccttgcaactgttttgccaggtgcaggttgatagtgtcttaattcatgtct |
247 |
Q |
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| T |
4764327 |
tcagaagttggacttaagtttttgctt----aagtcccttgcaactgttttgccaggtgcaggttgatagtttcttaattcatgtct |
4764245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 10085152 - 10085016
Alignment:
| Q |
14 |
ttaatctctttagatttagaaataaactcggatgcatcttcaccacctcgcttgagtttggaaacttccatgttgattttgttgaatcatttactaagat |
113 |
Q |
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| T |
10085152 |
ttaatctctttagatttagaaataaactcggcagcatcttcaccacctcgcttgagtttggaaacttccgtgttgattttgttgaattctttacgaagat |
10085053 |
T |
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| Q |
114 |
tctcaaactcaaattgacgttttcgccattctatgtc |
150 |
Q |
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| T |
10085052 |
tcttcaactcaaattgatgttttcgccattctttgtc |
10085016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 36859802 - 36859731
Alignment:
| Q |
60 |
ctcgcttgagtttggaaacttccatgttgattttgttgaatcatttactaagattctcaaactcaaattgac |
131 |
Q |
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| T |
36859802 |
ctcgcttgagtttggaaacttccttattgattttgttgacttctttacggagattctcaaactcgaattgac |
36859731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 36859925 - 36859878
Alignment:
| Q |
13 |
cttaatctctttagatttagaaataaactcggatgcatcttcaccacc |
60 |
Q |
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| T |
36859925 |
cttaatctcttcagatttagcaataaactcggttgcatcttcaccacc |
36859878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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