View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17292_high_13 (Length: 240)
Name: NF17292_high_13
Description: NF17292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17292_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 38954516 - 38954614
Alignment:
| Q |
14 |
gaagcaaccattatccattttttgagagaccaagctgcttctgtttcagttcaaaaaagttttggctttctatgttgccttataataaggcaatgagtt |
112 |
Q |
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| T |
38954516 |
gaagcaaccattatccattttttgagagaccaagctgcttctgtttcagttcaaaaaagttttggctttctttgttgccttataataaggcaatgagtt |
38954614 |
T |
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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 38954660 - 38954727
Alignment:
| Q |
155 |
gtgtatcaacgaatattagtggtggataagtaatggttcctgtggcgtatgttagtatatatcccttt |
222 |
Q |
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| T |
38954660 |
gtgtatcaacgaatattagtggtggataagtaatggttcctgtggcgtatgttagtatatatcccttt |
38954727 |
T |
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