View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17292_high_16 (Length: 204)

Name: NF17292_high_16
Description: NF17292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17292_high_16
NF17292_high_16
[»] chr8 (2 HSPs)
chr8 (1-194)||(33684834-33685027)
chr8 (53-90)||(32691763-32691800)
[»] chr7 (2 HSPs)
chr7 (45-90)||(21238837-21238882)
chr7 (52-90)||(10893870-10893908)
[»] chr1 (4 HSPs)
chr1 (45-90)||(15792983-15793028)
chr1 (53-90)||(13709206-13709243)
chr1 (50-90)||(21057803-21057843)
chr1 (51-91)||(26390133-26390173)
[»] chr4 (1 HSPs)
chr4 (59-90)||(10435087-10435118)
[»] chr6 (1 HSPs)
chr6 (53-90)||(6284663-6284700)
[»] chr5 (2 HSPs)
chr5 (51-87)||(29200799-29200835)
chr5 (52-80)||(41831748-41831776)
[»] chr3 (1 HSPs)
chr3 (46-90)||(19323443-19323487)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 33684834 - 33685027
Alignment:
Q  1 caacacttctaatcgaatgtgaatctggtgtctcacatgtgtcgctgactcgacactaacacatgtgattacattcaattttgtcattttactacaaaca 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33684834 caacacttctaatcgaatctgaatctggtgtctcacatgtgtcgctgactcgacactaacacatgtgattacattcaattttgtcattttactacaaaca 33684933  T
Q  101 ctttttattgaaggagtgtttaacacgacactgacacatctgattacatttaagttggtcattctctcaaactattactagtgtctgtgctgct 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  33684934 ctttttattgaaggagtgtttaacacgacactgacacatctgattacatttaagttggtcattttctcaaactattactagtgtcagtgctgct 33685027  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 32691800 - 32691763
Alignment:
Q  53 acactaacacatgtgattacattcaattttgtcatttt 90  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  32691800 acactgacacatgtgattacattcaattatgtcatttt 32691763  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 21238882 - 21238837
Alignment:
Q  45 ctgactcgacactaacacatgtgattacattcaattttgtcatttt 90  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||    
T  21238882 ctgactccacactaacacatgtgattacattcaattttgacatttt 21238837  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 10893870 - 10893908
Alignment:
Q  52 gacactaacacatgtgattacattcaattttgtcatttt 90  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  10893870 gacaccaacacatgtgattacattcaattatgtcatttt 10893908  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 15792983 - 15793028
Alignment:
Q  45 ctgactcgacactaacacatgtgattacattcaattttgtcatttt 90  Q
    ||||||||||||| |||||||||||||| ||||||| |||||||||    
T  15792983 ctgactcgacactgacacatgtgattacgttcaattgtgtcatttt 15793028  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 13709243 - 13709206
Alignment:
Q  53 acactaacacatgtgattacattcaattttgtcatttt 90  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  13709243 acactgacacatctgattacattcaattttgtcatttt 13709206  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 21057843 - 21057803
Alignment:
Q  50 tcgacactaacacatgtgattacattcaattttgtcatttt 90  Q
    |||||||||||||||| |||||||||||||| ||| |||||    
T  21057843 tcgacactaacacatgcgattacattcaattatgttatttt 21057803  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 26390133 - 26390173
Alignment:
Q  51 cgacactaacacatgtgattacattcaattttgtcatttta 91  Q
    ||||||| |||| ||||||||||||||||| ||||||||||    
T  26390133 cgacactgacacttgtgattacattcaattatgtcatttta 26390173  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 90
Target Start/End: Original strand, 10435087 - 10435118
Alignment:
Q  59 acacatgtgattacattcaattttgtcatttt 90  Q
    ||||||||||||||||||||||||||||||||    
T  10435087 acacatgtgattacattcaattttgtcatttt 10435118  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 6284663 - 6284700
Alignment:
Q  53 acactaacacatgtgattacattcaattttgtcatttt 90  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  6284663 acactaacacatgtgattaaattcaattatgtcatttt 6284700  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 29200799 - 29200835
Alignment:
Q  51 cgacactaacacatgtgattacattcaattttgtcat 87  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  29200799 cgacaccaacacatgtgattacattcaattatgtcat 29200835  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 41831748 - 41831776
Alignment:
Q  52 gacactaacacatgtgattacattcaatt 80  Q
    |||||||||||||||||||||||||||||    
T  41831748 gacactaacacatgtgattacattcaatt 41831776  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 19323443 - 19323487
Alignment:
Q  46 tgactcgacactaacacatgtgattacattcaattttgtcatttt 90  Q
    |||| ||||||| ||||||||||||| |||||||| |||||||||    
T  19323443 tgacgcgacacttacacatgtgattaaattcaattatgtcatttt 19323487  T

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