View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17292_high_3 (Length: 399)

Name: NF17292_high_3
Description: NF17292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17292_high_3
NF17292_high_3
[»] chr6 (8 HSPs)
chr6 (19-164)||(30780323-30780468)
chr6 (19-166)||(25054493-25054640)
chr6 (19-164)||(3962592-3962737)
chr6 (19-164)||(17193740-17193885)
chr6 (112-165)||(17193887-17193940)
chr6 (112-165)||(25054438-25054491)
chr6 (112-165)||(30780268-30780321)
chr6 (112-164)||(3962538-3962590)
[»] chr8 (8 HSPs)
chr8 (19-172)||(10756504-10756658)
chr8 (19-164)||(29739963-29740108)
chr8 (112-167)||(29739906-29739961)
chr8 (112-164)||(10756450-10756502)
chr8 (108-161)||(11128887-11128940)
chr8 (128-164)||(27887565-27887601)
chr8 (128-164)||(27946223-27946259)
chr8 (128-164)||(28026466-28026502)
[»] chr5 (11 HSPs)
chr5 (19-164)||(11772795-11772940)
chr5 (19-164)||(17534545-17534690)
chr5 (90-165)||(8881021-8881096)
chr5 (112-164)||(11772741-11772793)
chr5 (112-164)||(17534692-17534744)
chr5 (122-166)||(8881095-8881139)
chr5 (131-165)||(244234-244268)
chr5 (135-165)||(11772956-11772986)
chr5 (114-164)||(43514489-43514539)
chr5 (131-164)||(245988-246021)
chr5 (114-166)||(43513816-43513868)
[»] chr3 (5 HSPs)
chr3 (19-163)||(34630643-34630786)
chr3 (38-164)||(46905406-46905529)
chr3 (112-165)||(34630588-34630641)
chr3 (114-164)||(22899519-22899569)
chr3 (112-164)||(46906267-46906319)
[»] chr4 (5 HSPs)
chr4 (19-161)||(51268378-51268521)
chr4 (112-164)||(51268324-51268376)
chr4 (114-164)||(29337158-29337208)
chr4 (114-164)||(44891723-44891773)
chr4 (128-160)||(12157302-12157334)
[»] chr7 (2 HSPs)
chr7 (38-126)||(43405484-43405572)
chr7 (112-164)||(43406316-43406368)
[»] chr2 (3 HSPs)
chr2 (108-167)||(18900621-18900680)
chr2 (114-165)||(45627809-45627860)
chr2 (114-165)||(44995643-44995694)
[»] chr1 (4 HSPs)
chr1 (108-163)||(45970002-45970057)
chr1 (114-164)||(26853111-26853161)
chr1 (112-166)||(38459408-38459461)
chr1 (112-164)||(38460695-38460746)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 5e-72; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 30780323 - 30780468
Alignment:
Q  19 aggaagccacctcaccccaatttttaatacatttcaatttcatattaggttgccggttaattaaacaaaggacggggatgatgtgtcaacatgttattgg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  30780323 aggaagccacctcaccccaatttttaatacatttcaatttcatattaggttgtcggttaattaaacaaaggatggggatgatgtgtcaacatgttattgg 30780422  T
Q  119 agtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30780423 agtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 30780468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 25054493 - 25054640
Alignment:
Q  19 aggaagccacctcaccccaatttttaatacatttcaatttcatattaggttgccggttaattaaacaaaggacggggatgatgtgtcaacatgttattgg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||    
T  25054493 aggaagccacctcaccccaatttttaatacatttcaatttcatattaggttgtcagttaattaaacaaaggatggggatgatgtgtcaacatgttattgg 25054592  T
Q  119 agtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25054593 agtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 25054640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 3962592 - 3962737
Alignment:
Q  19 aggaagccacctcaccccaatttttaatacatttcaatttcatattaggttgccggttaattaaacaaaggacggggatgatgtgtcaacatgttattgg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||    
T  3962592 aggaagccacctcaccccaatttttaatacatttcaatttcatattaggttgtcggttaattaaacaaaggatggagatgatgtgtcaacatgttattgg 3962691  T
Q  119 agtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3962692 agtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 3962737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 17193885 - 17193740
Alignment:
Q  19 aggaagccacctcaccccaatttttaatacatttcaatttcatattaggttgccggttaattaaacaaaggacggggatgatgtgtcaacatgttattgg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||    
T  17193885 aggaagccacctcaccccaatttttaatacatttcaatttcatattaggttgtcggttaattaaacaaaggatggggatgatgtgtcaacatattattgg 17193786  T
Q  119 agtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  17193785 agtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 17193740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 17193887 - 17193940
Alignment:
Q  112 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17193887 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 17193940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 25054491 - 25054438
Alignment:
Q  112 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25054491 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 25054438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 30780321 - 30780268
Alignment:
Q  112 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30780321 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 30780268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 3962590 - 3962538
Alignment:
Q  112 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3962590 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 3962538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 10756504 - 10756658
Alignment:
Q  19 aggaagccacctcaccccaatttttaatacatttcaatttcatattaggttgccggttaattaaacaaaggacggggatgatgtgtcaacatgttattgg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||    
T  10756504 aggaagccacctcaccccaatttttaatacatttcaatttcatattaggttgtcagttaattaaacaaaggatggggatgatgtgtcaacatgttattgg 10756603  T
Q  119 agtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc-tattttat 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10756604 agtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcatattttat 10756658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 29739963 - 29740108
Alignment:
Q  19 aggaagccacctcaccccaatttttaatacatttcaatttcatattaggttgccggttaattaaacaaaggacggggatgatgtgtcaacatgttattgg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||    
T  29739963 aggaagccacctcaccccaatttttaatacatttcaatttcatattaggttgtcagttaattaaacaaaggatggggatgatgtgtcaacatgttattgg 29740062  T
Q  119 agtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29740063 agtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 29740108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 29739961 - 29739906
Alignment:
Q  112 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctat 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29739961 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctat 29739906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 10756502 - 10756450
Alignment:
Q  112 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10756502 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 10756450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 11128887 - 11128940
Alignment:
Q  108 catgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcattt 161  Q
    ||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  11128887 catgtcattggagggtgttaaaagagtgtgtttgagagtgtgtccttagcattt 11128940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 27887565 - 27887601
Alignment:
Q  128 aaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    |||||||||| | ||||||||||||||||||||||||    
T  27887565 aaagagtgtgatagagagtttgtccttagcatttctc 27887601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 27946223 - 27946259
Alignment:
Q  128 aaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    |||||||||| | ||||||||||||||||||||||||    
T  27946223 aaagagtgtgatagagagtttgtccttagcatttctc 27946259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 28026466 - 28026502
Alignment:
Q  128 aaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    |||||||||| | ||||||||||||||||||||||||    
T  28026466 aaagagtgtgatagagagtttgtccttagcatttctc 28026502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 11772795 - 11772940
Alignment:
Q  19 aggaagccacctcaccccaatttttaatacatttcaatttcatattaggttgccggttaattaaacaaaggacggggatgatgtgtcaacatgttattgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||    
T  11772795 aggaagccacctcaccccaatttttaatacatttcaatttcatattaggttgttggttaattaaacaaaggatggggatgatgtgtcaacatgttattgg 11772894  T
Q  119 agtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  11772895 agtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 11772940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 17534690 - 17534545
Alignment:
Q  19 aggaagccacctcaccccaatttttaatacatttcaatttcatattaggttgccggttaattaaacaaaggacggggatgatgtgtcaacatgttattgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||    
T  17534690 aggaagccacctcaccccaatttttaatacatttcaatttcatattaggttgttggttaattaaacaaaggatggggatgatgtgtcaacatgttattgg 17534591  T
Q  119 agtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  17534590 agtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 17534545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 8881096 - 8881021
Alignment:
Q  90 acggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8881096 acggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 8881021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 11772793 - 11772741
Alignment:
Q  112 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11772793 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 11772741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 17534692 - 17534744
Alignment:
Q  112 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17534692 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 17534744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 8881095 - 8881139
Alignment:
Q  122 gtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8881095 gtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 8881139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 244268 - 244234
Alignment:
Q  131 gagtgtgtttgagagtttgtccttagcatttctct 165  Q
    |||||||||||||||||||||| ||||||||||||    
T  244268 gagtgtgtttgagagtttgtccgtagcatttctct 244234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 165
Target Start/End: Original strand, 11772956 - 11772986
Alignment:
Q  135 gtgtttgagagtttgtccttagcatttctct 165  Q
    |||||||||||||||||||||||||||||||    
T  11772956 gtgtttgagagtttgtccttagcatttctct 11772986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 43514489 - 43514539
Alignment:
Q  114 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    ||||||||||||| |||||||||||| | |||| ||||| |||||||||||    
T  43514489 attggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctc 43514539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 245988 - 246021
Alignment:
Q  131 gagtgtgtttgagagtttgtccttagcatttctc 164  Q
    |||||||||||||||||||||| |||||||||||    
T  245988 gagtgtgtttgagagtttgtccatagcatttctc 246021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 43513868 - 43513816
Alignment:
Q  114 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 166  Q
    ||||||||||||| |||||||||||| | |||| ||||| |||||||| ||||    
T  43513868 attggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttatcta 43513816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 34630643 - 34630786
Alignment:
Q  19 aggaagccacctcaccccaatttttaatacatttcaatttcatattaggttgccggttaattaaacaaaggacggggatgatgtgtcaacatgttattgg 118  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  34630643 aggaagccacctcaccc-aatttttaatacatttcaatttcatattaggttgtcggttaattaaacaaaggatggggatgatgtgtcaacatgttattgg 34630741  T
Q  119 agtgtgttgaaagagtgtgtttgagagtttgtccttagcatttct 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34630742 agtgtgttgaaagagtgtgtttgagagtttgtccttagcatttct 34630786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 38 - 164
Target Start/End: Complemental strand, 46905529 - 46905406
Alignment:
Q  38 atttttaatacatttcaatttcatattaggttgccggttaattaaacaaaggacggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtg 137  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||   | |||||||||||||||||||||||||||| |||||    
T  46905529 atttttaatacatttcaatttcatatcaggttgccggttaattaaacaaaggatggggatg---tatcaacatgttattggagtgtgttgaaagtgtgtg 46905433  T
Q  138 tttgagagtttgtccttagcatttctc 164  Q
    ||||||||||| |||||||||||||||    
T  46905432 tttgagagtttatccttagcatttctc 46905406  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 34630641 - 34630588
Alignment:
Q  112 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34630641 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 34630588  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 22899519 - 22899569
Alignment:
Q  114 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22899519 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 22899569  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 46906267 - 46906319
Alignment:
Q  112 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  46906267 ttattggagtgtgtaaaaagagtgtgtttgagggtttgtccttagcatttctc 46906319  T

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Target: chr4 (Bit Score: 128; Significance: 5e-66; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 51268378 - 51268521
Alignment:
Q  19 aggaagccacctcaccccaa-tttttaatacatttcaatttcatattaggttgccggttaattaaacaaaggacggggatgatgtgtcaacatgttattg 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  51268378 aggaagccacctcaccccaaatttttaatacatttcaatttcatattaggttgtcggttaattaaacaaaggatggggatgatgtgtcaacatgttattg 51268477  T
Q  118 gagtgtgttgaaagagtgtgtttgagagtttgtccttagcattt 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  51268478 gagtgtgttgaaagagtgtgtttgagagtttgtccttagcattt 51268521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 51268376 - 51268324
Alignment:
Q  112 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51268376 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 51268324  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 29337208 - 29337158
Alignment:
Q  114 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    ||||| ||||||| |||||||||||| |||||| ||||| |||||||||||    
T  29337208 attggtgtgtgttaaaagagtgtgttagagagtgtgtccctagcatttctc 29337158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 44891773 - 44891723
Alignment:
Q  114 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    ||||||||||||| |||||||||||| | |||| ||||| |||||||||||    
T  44891773 attggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctc 44891723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 12157302 - 12157334
Alignment:
Q  128 aaagagtgtgtttgagagtttgtccttagcatt 160  Q
    |||||||||||| ||||||||||||||||||||    
T  12157302 aaagagtgtgttagagagtttgtccttagcatt 12157334  T

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Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 43405572 - 43405484
Alignment:
Q  38 atttttaatacatttcaatttcatattaggttgccggttaattaaacaaaggacggggatgatgtgtcaacatgttattggagtgtgtt 126  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  43405572 atttttaatacatttcaatttcatatcaggttgccggttaattaaacaaaggatggggatgacgtgtcaacatgttattggagtgtgtt 43405484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 43406316 - 43406368
Alignment:
Q  112 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    ||||||||||||||  |||||||||||||||| |||| |||||||||||||||    
T  43406316 ttattggagtgtgtcaaaagagtgtgtttgagggtttatccttagcatttctc 43406368  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 18900680 - 18900621
Alignment:
Q  108 catgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctat 167  Q
    ||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  18900680 catgtcattggagagtgttaaaagagtgtgtttgagagtgtgtccttagcatttctctat 18900621  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 45627860 - 45627809
Alignment:
Q  114 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 165  Q
    ||||||||||||| |||||||||||| | |||||||||| ||||||||||||    
T  45627860 attggagtgtgttaaaagagtgtgttagggagtttgtccctagcatttctct 45627809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 44995694 - 44995643
Alignment:
Q  114 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 165  Q
    ||||||||||||| ||||||| |||| |||||||||||| | ||||||||||    
T  44995694 attggagtgtgttaaaagagtatgttagagagtttgtccctggcatttctct 44995643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 45970057 - 45970002
Alignment:
Q  108 catgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttct 163  Q
    ||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  45970057 catgtcattggagagtgttaaaagagtgtgtttgagagtgtgtccttagcatttct 45970002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 26853111 - 26853161
Alignment:
Q  114 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    ||||||||||||| |||||||||||| | |||| ||||| |||||||||||    
T  26853111 attggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctc 26853161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 38459461 - 38459408
Alignment:
Q  112 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 166  Q
    ||||||||||||||| |||||||||||| | |||| ||||| |||||||||||||    
T  38459461 ttattggagtgtgtt-aaagagtgtgttagggagtgtgtccctagcatttctcta 38459408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 38460695 - 38460746
Alignment:
Q  112 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 164  Q
    ||||||||||||||| |||||||||||| | |||| ||||| |||||||||||    
T  38460695 ttattggagtgtgtt-aaagagtgtgttagggagtgtgtccctagcatttctc 38460746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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