View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17292_high_4 (Length: 388)
Name: NF17292_high_4
Description: NF17292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17292_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 36385787 - 36386147
Alignment:
| Q |
18 |
aatatgacctcattcatcgttgggcttgttgctttataatagaagcatcattttcattttataaccnnnnnnngctggctttaacttgtgaattagtcga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36385787 |
aatatgacctcattcatcgttgggcttgttgctttataatagaagcatcattttcattttataaccaaaaaaagctggctttaacttgtgaattagtcga |
36385886 |
T |
|
| Q |
118 |
tgtggtctctagacaaaaaacagagaaatgcactatgccaatacctctctacaaatgcacttttattctcacattcatttgtttccaatcattcttcatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36385887 |
tgtggtctctagacaaaaaacagagaaatgcactatgccaatacctctctacaaatgcacttttattctcacattcatttgtttccaatcattcttcatt |
36385986 |
T |
|
| Q |
218 |
tccatttctcaaaacagaacatgaagactactttctgaggaagcaaagccttcaatgccatttgcaatgaaaattatctaggcaatgagaacaccatttg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36385987 |
tccatttctcaaaacagaacatgaagactgctttctgaggaagcaaagccttcaatgccatttgcaatgaaaattatctaggcaatgagagcaccatttg |
36386086 |
T |
|
| Q |
318 |
taattggtctgccaagaacaaagcattttgaaggttgcaggttccaaatttaaggcctttg |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36386087 |
taattggtctgccaagaacaaagcattttgaaggttgcaggttccaaatttaaggcctttg |
36386147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 249 - 353
Target Start/End: Original strand, 36370631 - 36370735
Alignment:
| Q |
249 |
tttctgaggaagcaaagccttcaatgccatttgcaatgaaaattatctaggcaatgagaacaccatttgtaattggtctgccaagaacaaagcattttga |
348 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||| |||| | | ||| |||| | ||| |||||||| ||||||| |||||||| |
|
|
| T |
36370631 |
tttctgaggaagcaaagtctttaatgccatttgcaatgaaaattatctagacaattacagcactatttttcattagtctgccaggaacaaatcattttga |
36370730 |
T |
|
| Q |
349 |
aggtt |
353 |
Q |
| |
|
||||| |
|
|
| T |
36370731 |
aggtt |
36370735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 353
Target Start/End: Original strand, 36378151 - 36378250
Alignment:
| Q |
257 |
gaagcaaagccttcaatgccatttgcaatgaaaattatctaggcaatgagaacaccatttgtaattggtct---gccaagaacaaagcattttgaaggtt |
353 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||| |||||| | ||| |||| | ||| |||| |||| |||||| ||||||||||||| |
|
|
| T |
36378151 |
gaagcaaagtcttcaatgccatttgcaacgaaaattatctagacaatgacagcactatttttgattagtctgcagccacaaacaaatcattttgaaggtt |
36378250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 36376006 - 36376049
Alignment:
| Q |
189 |
cattcatttgtttccaatcattcttcatttccatttctcaaaac |
232 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
36376006 |
cattcatttgtttctaatcattcttcatttccttttctcaaaac |
36376049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 36366585 - 36366704
Alignment:
| Q |
18 |
aatatgacctcattcatcgttgggcttgttgctttataatagaagcatcattttcattttataaccnnnnnnngctggctttaacttgtgaattagtcga |
117 |
Q |
| |
|
|||||||||||||| || |||||| ||||||||| | | ||||||| | ||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
36366585 |
aatatgacctcattagtcattgggcctgttgctttgtgagagaagcagtttgttcattttataactataaaaggctggctttaacttgagaattagtcga |
36366684 |
T |
|
| Q |
118 |
tgtggtctctagacaaaaaa |
137 |
Q |
| |
|
||||| | ||||||||||| |
|
|
| T |
36366685 |
tgtgggttatagacaaaaaa |
36366704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 36370543 - 36370586
Alignment:
| Q |
183 |
ttctcacattcatttgtttccaatcattcttcatttccatttct |
226 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
36370543 |
ttctcaaattcatttgttttcaatcattcttcatttccttttct |
36370586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 36379150 - 36379199
Alignment:
| Q |
183 |
ttctcacattcatttgtttccaatcattcttcatttccatttctcaaaac |
232 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| | ||||||||||| |
|
|
| T |
36379150 |
ttctcacattcatttgttttgaataattcttcattttcttttctcaaaac |
36379199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University