View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17292_high_5 (Length: 368)
Name: NF17292_high_5
Description: NF17292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17292_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 352
Target Start/End: Original strand, 38185370 - 38185711
Alignment:
| Q |
12 |
atgtgatgatgaggaagtggtggttttgcgtcatggtaatggtggcttgtgaaaatgcaatagcacgagctaagtgttcttatataagtggtggctgtgg |
111 |
Q |
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| T |
38185370 |
atgtgatgatgaggaagtggtggttttgcgccatggtaatggtggcttgtgaaaatgcaatagcacaagctaagtgttcttatataagtggtgaccgtgg |
38185469 |
T |
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| Q |
112 |
tgacgttcgaggtgaccaaactctatgtggtact-atgtataattggtggtatagaagtgatttggatattatctttttaacattattttttctaacgcc |
210 |
Q |
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| T |
38185470 |
tgacgttctaggtgaccaaactctatgtgatactcatgtataattggtggtatagaagtgatttggatattatttttttaacattattttttttaacgcc |
38185569 |
T |
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| Q |
211 |
cattattttatggaaactcaaatgtgtcccacgtgtttgaaatagatcacatatgaaatgatgaaatccacgtgagtttgatacaataaaagaccgtgtg |
310 |
Q |
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| T |
38185570 |
cattattttatggaaactcaaatgtgtcccacgtttttgaaatagatcacatatgaaatgatgaaatccacgtgagtttgatacaataaaagaccgtgtg |
38185669 |
T |
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| Q |
311 |
ttgtagaaaatatttaaaagaaagagtttttaacttttctct |
352 |
Q |
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| T |
38185670 |
ttgtagaaaatatttaaaagaaagagtttttaacatttctct |
38185711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 38180701 - 38180768
Alignment:
| Q |
12 |
atgtgatgatgaggaagtggtggttttgcgtcatggtaatggtggcttgtgaaaatgcaatagcacga |
79 |
Q |
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| T |
38180701 |
atgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaatagcacga |
38180768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 38170887 - 38170947
Alignment:
| Q |
12 |
atgtgatgatgaggaagtggtggttttgcgtcatggtaatggtggcttgtgaaaatgcaat |
72 |
Q |
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|||| ||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||| |
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| T |
38170887 |
atgttatgatgaggaagtggtggttttgcgccatggtagtggtggattgtgaaaatgcaat |
38170947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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