View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17292_high_8 (Length: 343)
Name: NF17292_high_8
Description: NF17292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17292_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 325
Target Start/End: Original strand, 33275172 - 33275479
Alignment:
| Q |
14 |
gaacatgagacgttgaagagaaacacacttcagaatttcaagtcaatattacggaacgaactcaatgaactacatnnnnnnntattttaaaagcaaattt |
113 |
Q |
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| T |
33275172 |
gaacatgagatcttgaagaaaaacacacttcagaatttcaagtcaatattacggaacgaactcaatagactacataaaaaaatattttaaaagcaaattt |
33275271 |
T |
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| Q |
114 |
tacaataatataga-caaatttgtcaaattcagatcttctcttctaaatccaatgggcaatatttggttggataaatttgaaattgttgtggaataccag |
212 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33275272 |
tacaataatatagaacaaatttgtcaaattcagatcttctcttctaaatccaatgggcaatatttggttggataaatttgaaattattgtggaataccag |
33275371 |
T |
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| Q |
213 |
caaccctacaaataaaatgatcttaaagccacgctaaagattaaagaataaggaaggaatcaccaaatcacttagaaaaacaagaaaatacattaaggtt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33275372 |
caaccctacaaataaaatgatcttaaagccacgctaaagattaaagaat----aaggaatcacc-aatcacttagaaaaacaagaaaatacattaaggtt |
33275466 |
T |
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| Q |
313 |
aggtagaatttag |
325 |
Q |
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||||||||||||| |
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| T |
33275467 |
aggtagaatttag |
33275479 |
T |
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