View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17292_high_9 (Length: 309)
Name: NF17292_high_9
Description: NF17292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17292_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 36605636 - 36605364
Alignment:
| Q |
18 |
ctgtgacttagggctttgcatgagaaggaggaaagaacaaaaggaggcttaacacgttctcaattcttcgttatatcatttttgtgcagctttgcatact |
117 |
Q |
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| T |
36605636 |
ctgtgacttagggctttgcatgagaaggaggaaagaacaaaaggaggcttaacacgttctcaattcttcgttatatcatttttgtgcagctttgcatact |
36605537 |
T |
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| Q |
118 |
acgttttccctggttacctttttcaaatgttaacctcactctcttggatatgttgggtatttcctcatagtgtattggcccagcagcttgggtcgggcct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36605536 |
acgttttccctggttacctttttcaaatgttaacctcactctcttggatatgttgggtatttcctcatagtgtattggcccagcagcttgggtcgggcct |
36605437 |
T |
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| Q |
218 |
aaagggtctcggcatcggcgcaattgggcttgactggtctgccatctcagcttaccttggaagcccacttgca |
290 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36605436 |
aaagggtctcggcatcggtgcaattgggcttgactggtctgccatctcagcttaccttggaagcccacttgca |
36605364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 57 - 181
Target Start/End: Complemental strand, 21173056 - 21172932
Alignment:
| Q |
57 |
aaaggaggcttaacacgttctcaattcttcgttatatcatttttgtgcagctttgcatactacgttttccctggttacctttttcaaatgttaacctcac |
156 |
Q |
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||||||||||||||||| ||| |||||| ||||| ||||| | ||||| |||||||| || || || || |||||| | |||| ||||||||| |||| |
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| T |
21173056 |
aaaggaggcttaacacgaaatcagttcttccttataacatttatttgcagttttgcatattatgtattgccaggttacttatttccaatgttaacatcac |
21172957 |
T |
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| Q |
157 |
tctcttggatatgttgggtatttcc |
181 |
Q |
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| T |
21172956 |
tctcttggatatgttgggtgtttcc |
21172932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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