View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17292_low_14 (Length: 239)
Name: NF17292_low_14
Description: NF17292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17292_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 36860179 - 36860007
Alignment:
| Q |
63 |
cttgagattaggttcagctcttttctcaccccatgttcggacgacaacattgttcgcctaaaacataaattatcccatgaatttcaatacagacaaaaca |
162 |
Q |
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| T |
36860179 |
cttgagcttcggttcatctcttttctcaccccatgttcggacgacaagattattagcctaaaacataaattatcctatgaatttcaa-acaaatactaca |
36860081 |
T |
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| Q |
163 |
ttatcaaagaaaaaatcaatagaattgtaaataaagcaaacctcatcattgctaatgggaacagaatcatgaac |
236 |
Q |
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| T |
36860080 |
ttatcaaagaaaaaatcaatagaattgtaaataaaacaaacctcatcattgctgatgggaacagaatcatgaac |
36860007 |
T |
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Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 10085412 - 10085235
Alignment:
| Q |
63 |
cttgagattaggttcagctcttttctcaccccatgttcggacgacaacattgttcgcctaaaacataaat--tatcccatgaattt--caatacagacaa |
158 |
Q |
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||||||||||| || |||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||| ||||||| || |
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| T |
10085412 |
cttgagattagattaagctcttttctcaccccatgttcggacggcaacattgtttgcctaaaacataaatattatcccatgaatttttcaatacaaactc |
10085313 |
T |
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| Q |
159 |
aacattatcaaagaaaaaatcaatagaattgtaaataaagcaaacctcatcattgctaatgggaacagaatcatgaac |
236 |
Q |
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| T |
10085312 |
tatattatctaagaaaaaatcaatagaattgtaaataaaacaaacgtcgtcattgctaatgggaacagaatcatgaac |
10085235 |
T |
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