View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17292_low_15 (Length: 232)

Name: NF17292_low_15
Description: NF17292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17292_low_15
NF17292_low_15
[»] scaffold0119 (1 HSPs)
scaffold0119 (161-232)||(685-756)
[»] chr6 (18 HSPs)
chr6 (161-232)||(26670038-26670109)
chr6 (161-232)||(9698362-9698433)
chr6 (163-232)||(30735984-30736053)
chr6 (161-232)||(7273364-7273435)
chr6 (161-232)||(26466799-26466870)
chr6 (163-232)||(24204016-24204085)
chr6 (161-232)||(13743250-13743321)
chr6 (161-232)||(13748750-13748821)
chr6 (161-232)||(30014343-30014414)
chr6 (161-232)||(3213400-3213471)
chr6 (161-232)||(21279929-21280000)
chr6 (161-232)||(7292747-7292818)
chr6 (161-232)||(7367549-7367620)
chr6 (163-232)||(27441544-27441613)
chr6 (161-229)||(31109254-31109322)
chr6 (161-232)||(21293706-21293777)
chr6 (161-232)||(33242403-33242474)
chr6 (161-232)||(33253913-33253984)
[»] chr7 (27 HSPs)
chr7 (161-232)||(35069721-35069792)
chr7 (161-232)||(5015395-5015466)
chr7 (161-232)||(24001041-24001112)
chr7 (161-232)||(42538460-42538531)
chr7 (161-232)||(42972852-42972923)
chr7 (163-232)||(44326180-44326249)
chr7 (161-229)||(5810956-5811024)
chr7 (170-232)||(32029846-32029908)
chr7 (163-229)||(43343656-43343722)
chr7 (163-229)||(44416966-44417032)
chr7 (163-232)||(10573751-10573820)
chr7 (164-232)||(26898431-26898499)
chr7 (161-232)||(9216302-9216372)
chr7 (161-232)||(40236919-40236990)
chr7 (163-232)||(4638228-4638297)
chr7 (161-229)||(5194263-5194331)
chr7 (161-232)||(31513287-31513358)
chr7 (161-228)||(39998408-39998475)
chr7 (169-232)||(45326028-45326091)
chr7 (162-232)||(31408662-31408732)
chr7 (161-232)||(41861674-41861747)
chr7 (161-214)||(47279744-47279797)
chr7 (184-228)||(38160612-38160656)
chr7 (161-229)||(43317443-43317511)
chr7 (177-228)||(27393293-27393344)
chr7 (163-232)||(16180386-16180454)
chr7 (161-194)||(38160661-38160694)
[»] chr4 (31 HSPs)
chr4 (161-232)||(27550309-27550380)
chr4 (161-229)||(1771298-1771366)
chr4 (163-232)||(43514715-43514784)
chr4 (161-232)||(25051693-25051764)
chr4 (161-232)||(12496956-12497027)
chr4 (161-232)||(27864564-27864635)
chr4 (161-232)||(28982851-28982922)
chr4 (161-232)||(33703141-33703212)
chr4 (170-232)||(39631109-39631172)
chr4 (161-232)||(55966375-55966446)
chr4 (163-232)||(27893871-27893940)
chr4 (161-232)||(27316742-27316813)
chr4 (161-232)||(35017733-35017803)
chr4 (170-232)||(43949830-43949893)
chr4 (164-228)||(23204811-23204875)
chr4 (161-229)||(28988473-28988541)
chr4 (161-232)||(711960-712031)
chr4 (161-232)||(17619181-17619252)
chr4 (161-228)||(23035980-23036047)
chr4 (163-228)||(3756279-3756344)
chr4 (162-229)||(41878407-41878474)
chr4 (161-224)||(45490350-45490413)
chr4 (161-232)||(48463479-48463550)
chr4 (161-232)||(55272405-55272476)
chr4 (163-229)||(43735744-43735810)
chr4 (161-232)||(960899-960970)
chr4 (161-228)||(21687006-21687073)
chr4 (161-228)||(32728357-32728424)
chr4 (163-232)||(31680904-31680973)
chr4 (163-232)||(35037007-35037076)
chr4 (163-232)||(41327572-41327641)
[»] chr3 (25 HSPs)
chr3 (161-228)||(25413681-25413748)
chr3 (161-232)||(42100688-42100759)
chr3 (161-232)||(40808865-40808936)
chr3 (161-232)||(46941053-46941124)
chr3 (162-232)||(54237097-54237167)
chr3 (161-232)||(24688431-24688502)
chr3 (161-232)||(45126957-45127028)
chr3 (161-228)||(54246181-54246248)
chr3 (162-232)||(42394448-42394518)
chr3 (161-229)||(47191058-47191125)
chr3 (161-232)||(4190294-4190365)
chr3 (163-232)||(27748565-27748634)
chr3 (161-232)||(36150130-36150201)
chr3 (162-232)||(40480750-40480820)
chr3 (163-220)||(1078229-1078286)
chr3 (161-232)||(9434124-9434195)
chr3 (161-232)||(10457921-10457992)
chr3 (161-228)||(51757593-51757660)
chr3 (161-232)||(53273713-53273784)
chr3 (163-229)||(53581890-53581956)
chr3 (161-228)||(34791829-34791896)
chr3 (161-232)||(52628006-52628077)
chr3 (161-197)||(52629840-52629876)
chr3 (161-232)||(25996268-25996339)
chr3 (176-232)||(51249323-51249379)
[»] chr1 (21 HSPs)
chr1 (161-232)||(43571115-43571186)
chr1 (161-232)||(5489776-5489847)
chr1 (161-232)||(48498991-48499062)
chr1 (161-232)||(24769528-24769599)
chr1 (161-228)||(50448293-50448360)
chr1 (161-229)||(750337-750405)
chr1 (161-232)||(37814778-37814849)
chr1 (161-232)||(44112677-44112748)
chr1 (161-232)||(48119628-48119699)
chr1 (161-232)||(35003294-35003365)
chr1 (163-229)||(7447828-7447893)
chr1 (161-218)||(14427347-14427404)
chr1 (161-232)||(23989552-23989624)
chr1 (170-232)||(4401336-4401399)
chr1 (161-232)||(38335918-38335989)
chr1 (161-232)||(41065153-41065224)
chr1 (163-232)||(2497591-2497660)
chr1 (161-229)||(35000145-35000213)
chr1 (161-232)||(38113224-38113295)
chr1 (161-232)||(45639761-45639832)
chr1 (161-232)||(46168383-46168454)
[»] chr2 (24 HSPs)
chr2 (161-231)||(16096747-16096817)
chr2 (161-228)||(1750414-1750481)
chr2 (161-228)||(12302286-12302353)
chr2 (162-232)||(19047158-19047228)
chr2 (163-232)||(43490430-43490499)
chr2 (156-232)||(30838627-30838703)
chr2 (170-232)||(33229310-33229373)
chr2 (161-232)||(43114557-43114628)
chr2 (161-232)||(43335792-43335863)
chr2 (163-232)||(11825683-11825752)
chr2 (161-232)||(4764755-4764826)
chr2 (161-232)||(12415489-12415560)
chr2 (161-232)||(12427549-12427620)
chr2 (161-232)||(18491705-18491776)
chr2 (163-229)||(41282006-41282072)
chr2 (161-229)||(16803968-16804036)
chr2 (161-229)||(16843250-16843318)
chr2 (161-200)||(42849907-42849946)
chr2 (161-218)||(966877-966934)
chr2 (161-232)||(14285676-14285747)
chr2 (162-213)||(34817824-34817875)
chr2 (163-204)||(7070418-7070459)
chr2 (161-229)||(13780767-13780835)
chr2 (161-229)||(36168594-36168662)
[»] chr8 (24 HSPs)
chr8 (163-232)||(30912591-30912660)
chr8 (161-229)||(29705362-29705430)
chr8 (161-232)||(2165992-2166063)
chr8 (161-232)||(11582766-11582837)
chr8 (161-232)||(36743512-36743583)
chr8 (163-232)||(42295197-42295266)
chr8 (163-228)||(42699259-42699324)
chr8 (161-228)||(2546996-2547063)
chr8 (161-232)||(30660771-30660842)
chr8 (163-232)||(20148762-20148831)
chr8 (161-232)||(1375542-1375613)
chr8 (161-232)||(5754903-5754974)
chr8 (161-232)||(42197464-42197535)
chr8 (162-228)||(45397317-45397383)
chr8 (163-232)||(29800979-29801048)
chr8 (161-232)||(31384664-31384735)
chr8 (161-232)||(35181516-35181587)
chr8 (163-232)||(26125637-26125706)
chr8 (161-232)||(34304788-34304859)
chr8 (161-228)||(18066751-18066818)
chr8 (88-151)||(37425945-37426008)
chr8 (161-229)||(40528666-40528735)
chr8 (161-196)||(28977146-28977181)
chr8 (163-228)||(33630026-33630091)
[»] chr5 (12 HSPs)
chr5 (160-232)||(33855072-33855144)
chr5 (161-232)||(2614678-2614749)
chr5 (161-232)||(22512305-22512376)
chr5 (161-232)||(7617133-7617204)
chr5 (161-228)||(18033982-18034049)
chr5 (160-232)||(41334692-41334764)
chr5 (161-228)||(33801469-33801536)
chr5 (103-149)||(39785635-39785681)
chr5 (163-232)||(5256997-5257066)
chr5 (161-232)||(32473423-32473494)
chr5 (161-232)||(38470579-38470650)
chr5 (163-219)||(25915029-25915085)
[»] scaffold0038 (1 HSPs)
scaffold0038 (162-232)||(112656-112726)
[»] scaffold0385 (1 HSPs)
scaffold0385 (161-232)||(11251-11322)
[»] scaffold0187 (2 HSPs)
scaffold0187 (161-228)||(14221-14288)
scaffold0187 (161-228)||(24549-24616)
[»] scaffold0157 (1 HSPs)
scaffold0157 (161-232)||(23450-23521)
[»] scaffold0003 (1 HSPs)
scaffold0003 (163-232)||(45748-45817)


Alignment Details
Target: scaffold0119 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 685 - 756
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  685 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggta 756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 26670109 - 26670038
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26670109 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggta 26670038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 9698433 - 9698362
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||    
T  9698433 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggta 9698362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 30735984 - 30736053
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30735984 aaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggta 30736053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 7273435 - 7273364
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||||| |||||||||| ||||||||||||    
T  7273435 ggaaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggta 7273364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 26466799 - 26466870
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||    
T  26466799 ggaaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggta 26466870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 24204085 - 24204016
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||  |||||||||||||||||||||||    
T  24204085 aaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggta 24204016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 13743321 - 13743250
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||||||||||||| ||||||| |||| || |||||||||| |||||||||||||||||||||||    
T  13743321 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggta 13743250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 13748821 - 13748750
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||||||||||||| ||||||| |||| || |||||||||| |||||||||||||||||||||||    
T  13748821 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggta 13748750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 30014343 - 30014414
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||||||||| |||||| |||| | ||||||||||| |||||||||||    
T  30014343 ggaaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggta 30014414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 3213400 - 3213471
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||| |||||||||||||| |||| | ||||||||||| ||||||||| |||||||||||||    
T  3213400 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggta 3213471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 21279929 - 21280000
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||| |||||  |||||| ||| | |||||||||||||||||||||||    
T  21279929 ggaaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggta 21280000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 7292747 - 7292818
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||||| ||||||| ||||||| |||||| |||| ||||||  ||||||||||||||||||||||    
T  7292747 ggaaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggta 7292818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 7367549 - 7367620
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||| ||||||| | ||||||| |||||| ||||||||| | |||||||||||||||||||||||    
T  7367549 ggaaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggta 7367620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 27441544 - 27441613
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| |||||||||||||||||| || ||||||| |||||||| |  |||||||| |||||||||||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggta 27441613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 31109322 - 31109254
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||||| |||||||||||||||||| || |||| |||||| |||||| |||| | |||||||||||||    
T  31109322 ggaaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttg 31109254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 21293777 - 21293706
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||| |||||||||||||| ||||   || |||||||| ||||||||| |||||||||||||    
T  21293777 ggaaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggta 21293706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 33242403 - 33242474
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||||||||||||| |||| || ||||||  |||||||||| ||||||||| ||| |||||||||    
T  33242403 ggaaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggta 33242474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 33253913 - 33253984
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||||||||||||| |||| ||  |||||| |||||||||| |||| |||||||| || ||||||    
T  33253913 ggaaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggta 33253984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 35069721 - 35069792
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35069721 ggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggta 35069792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 5015395 - 5015466
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  5015395 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggta 5015466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 24001112 - 24001041
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||    
T  24001112 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggta 24001041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 42538531 - 42538460
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||    
T  42538531 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggta 42538460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 42972852 - 42972923
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42972852 ggaaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggta 42972923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 44326180 - 44326249
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| |||||| |||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||    
T  44326180 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggta 44326249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 5811024 - 5810956
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||  || ||||||||||||||||    
T  5811024 ggaaaatgttacatgaccaccctttattcctacaccccattgtacaccctatatattagggatattttg 5810956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 32029908 - 32029846
Alignment:
Q  170 tacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| |||||  |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32029908 tacataaacactttttattcctacaccccattgtacaccccatgtattagggatattttggta 32029846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 43343722 - 43343656
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||| ||||||||||| | |||||| |||||||| |||||||||| ||||||||||||||||||||    
T  43343722 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttg 43343656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 44417032 - 44416966
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||| ||||||||||| | |||||| |||||||| |||||||||| ||||||||||||||||||||    
T  44417032 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttg 44416966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 10573751 - 10573820
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| |||||| |||||||||||||| |||| || |||||||||| ||||||||||| |||||||||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggta 10573820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 26898499 - 26898431
Alignment:
Q  164 aaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    |||| ||||||||||||| ||||||| ||||||| ||||||||   |||||||||||||||||||||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggta 26898431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 9216302 - 9216372
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||||||| | || |||||||||| |||| ||||| ||||||||||||    
T  9216302 ggaaaatgttacatgaacaccctttattcctatatcctattgtacacc-catgcattagagatattttggta 9216372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 40236919 - 40236990
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||| || |||| || |||||||||| |||| |||||||| |||||||||    
T  40236919 ggaaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggta 40236990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 4638297 - 4638228
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| ||||||||||||| ||||||| ||||| | |||||||||| ||| ||||| |||||||||||||    
T  4638297 aaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggta 4638228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 5194331 - 5194263
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||||| ||||||||||||| ||||||| |||||| |||||||||||  |||| ||| ||||||||||    
T  5194331 ggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttg 5194263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 31513287 - 31513358
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||| ||||| || ||||||| |||||| ||| |||| |||| |||||||||||||    
T  31513287 ggaaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggta 31513358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 39998408 - 39998475
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||||| ||||||||||||  |||| || |||| || |||||||||| |||||||||||||||||||    
T  39998408 ggaaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggatatttt 39998475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 45326028 - 45326091
Alignment:
Q  169 ttacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    |||||| |||||| ||||||| |||| | ||||||||||| ||| |||||||||||||||||||    
T  45326028 ttacataaacaccttttattcatacatcacattgtacaccccatatattagggatattttggta 45326091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 31408732 - 31408662
Alignment:
Q  162 gaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    |||||| |||||||||||||||||| || ||||| | |||||||| | |||| |||| |||||||||||||    
T  31408732 gaaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggta 31408662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 41861674 - 41861747
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtat--tagggatattttggta 232  Q
    ||||||| ||||||||||||||||||||| ||||||| ||| ||||||  ||||||  ||| ||||||||||||    
T  41861674 ggaaaatgttacatgaacaccctttattcatacacccaattatacaccctatgtattatagagatattttggta 41861747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 47279797 - 47279744
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgt 214  Q
    |||||||||||||| || ||||||||||| |||| ||||||||||||| |||||    
T  47279797 ggaaaatattacataaataccctttattcatacatcccattgtacaccccatgt 47279744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 38160656 - 38160612
Alignment:
Q  184 ttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    |||||| ||||| |||||||||||| |||||||||||||||||||    
T  38160656 ttattcttacactccattgtacaccccatgtattagggatatttt 38160612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 43317443 - 43317511
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||||| ||||||||||||| ||||||| |||||| ||||||||| |  |||  ||||||||||||||    
T  43317443 ggaaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttg 43317511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 27393344 - 27393293
Alignment:
Q  177 acaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    |||||||||||||||||| || |||||||||   ||||||||||||||||||    
T  27393344 acaccctttattcctacatcctattgtacactctatgtattagggatatttt 27393293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 16180454 - 16180386
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| |||||| |||||| |||||||||||| ||||||||||||| || ||||||   |||||||||||    
T  16180454 aaaatgttacatcaacaccatttattcctaca-cccattgtacaccccacgtattataaatattttggta 16180386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 38160694 - 38160661
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctaca 194  Q
    ||||||| ||||||||||||||||||||||||||    
T  38160694 ggaaaatgttacatgaacaccctttattcctaca 38160661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 27550309 - 27550380
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  27550309 ggaaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggta 27550380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 1771366 - 1771298
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  1771366 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttg 1771298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 43514784 - 43514715
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||    
T  43514784 aaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggta 43514715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 25051693 - 25051764
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| | |||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  25051693 ggaaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggta 25051764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 12496956 - 12497027
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||| | |||||||||| ||||||||||||    
T  12496956 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggta 12497027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 27864564 - 27864635
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||| |||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||    
T  27864564 ggaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggta 27864635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 28982922 - 28982851
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||| |||||||| |||||||| | ||| |||||||||||||||||||    
T  28982922 ggaaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggta 28982851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 33703141 - 33703212
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||| ||||| |  |||||||||| |||||||||||||||||||||||    
T  33703141 ggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggta 33703212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 39631109 - 39631172
Alignment:
Q  170 tacatgaacacccttt-attcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  39631109 tacatgaacccccttttattcctacacctcattgtacacctcatgtattagggatattttggta 39631172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 55966446 - 55966375
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||| |||||||||||||| |||| ||||||||||| | |||||||||||||||||||||||    
T  55966446 ggaaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggta 55966375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 27893940 - 27893871
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| |||||| |||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||    
T  27893940 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggta 27893871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 27316813 - 27316742
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||| | |||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||    
T  27316813 ggaaaatgttaaacgaacaccctttattcctacacctcattatacaccccatgtattaaggatattttggta 27316742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 35017733 - 35017803
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||||||| | | ||||||||||| |||||| ||||||||||||||||    
T  35017733 ggaaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgta-tagggatattttggta 35017803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 43949893 - 43949830
Alignment:
Q  170 tacatgaacacccttt-attcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    |||||||||||||||| |||||| |||| ||||||||||| |||||||||||||||||||||||    
T  43949893 tacatgaacacccttttattcctgcacctcattgtacaccccatgtattagggatattttggta 43949830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 23204875 - 23204811
Alignment:
Q  164 aaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    |||| |||||||||||| ||||||||||||| ||||||||||| |  ||||||||||||||||||    
T  23204875 aaatgttacatgaacactctttattcctacatcccattgtacatcctatgtattagggatatttt 23204811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 28988473 - 28988541
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||||||| |||| | |||||| ||||||    
T  28988473 ggaaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttg 28988541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 711960 - 712031
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||| || ||||||| ||||||||||  ||| |||| |||||||||||||    
T  711960 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggta 712031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 17619252 - 17619181
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||||||||||||| |||| || ||||||| |||||||||| |||| |||| |||||||||||||    
T  17619252 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggta 17619181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 23035980 - 23036047
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||||| ||||||||||  ||||||||||||||||| ||||||||||  || |||||||||||||||    
T  23035980 ggaaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttt 23036047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 3756344 - 3756279
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||| |||||||||||||||||| || ||||||| |||||||||| |||| |||| |||||||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatatttt 3756279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 41878407 - 41878474
Alignment:
Q  162 gaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    |||||| |||||||||||| |||||||| |||||| |||||||||||  ||  |||||||||||||||    
T  41878407 gaaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttg 41878474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 45490413 - 45490350
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggata 224  Q
    ||||||| ||||||||||||  ||||||  |||| || ||||||||||||||||||||||||||    
T  45490413 ggaaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggata 45490350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 48463550 - 48463479
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||| |||||| ||||||| ||||   ||||||||| | |||||||||||||||||||||||    
T  48463550 ggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggta 48463479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 55272476 - 55272405
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||||||||||| |||||| || ||||| | |||||||||| |||| |||| |||||||||||||    
T  55272476 ggaaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggta 55272405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 43735744 - 43735810
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||||||||||||||| |||||||||||||| | |||| ||||   |||||||||| |||||||||    
T  43735744 aaaatattacatgaacatcctttattcctacatctcattatacattccatgtattagagatattttg 43735810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 960970 - 960899
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||| || ||||| | ||||||||||  ||  |||||||| |||||||||    
T  960970 ggaaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggta 960899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 21687006 - 21687073
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||||| ||||||||||| ||||||||  ||||||||||| |||| || |||||||||  |||||||    
T  21687006 ggaaaatgttacatgaacatcctttatttttacaccccattatacatcttatgtattagaaatatttt 21687073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 32728357 - 32728424
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||||| ||||||||||| |||||| || ||||||| |||||||||| |||| |||| ||| |||||    
T  32728357 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacatttt 32728424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 31680904 - 31680973
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| |||| | |||||| ||||||| ||||  |||||||||||| | | |||||||||||||||||||    
T  31680904 aaaatgttacgtaaacaccatttattcatacattccattgtacaccccgtatattagggatattttggta 31680973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 35037007 - 35037076
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| |||||||| |||||||||  | ||||| | |||||||||| |||| |||| |||||||||||||    
T  35037007 aaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggta 35037076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 41327641 - 41327572
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| ||||||  |||||||||||||  |||||||||||||||||| ||| | || ||| |||||||||    
T  41327641 aaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggta 41327572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 25413681 - 25413748
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25413681 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttt 25413748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 42100688 - 42100759
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  42100688 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggta 42100759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 40808865 - 40808936
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40808865 ggaaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggta 40808936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 46941053 - 46941124
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||    
T  46941053 ggaaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggta 46941124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 54237097 - 54237167
Alignment:
Q  162 gaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggta 54237167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 24688502 - 24688431
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||||||  ||||||||||||||||||||||    
T  24688502 ggaaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggta 24688431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 45127028 - 45126957
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||| |||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||    
T  45127028 ggaaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggta 45126957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 54246248 - 54246181
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  54246248 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttt 54246181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 42394518 - 42394448
Alignment:
Q  162 gaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    |||||| ||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||    
T  42394518 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggta 42394448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 47191125 - 47191058
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||    
T  47191125 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacc-catgtattagagatattttg 47191058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 4190365 - 4190294
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||| || ||||||| ||||||||||| ||||||||| ||||||||||||    
T  4190365 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggta 4190294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 27748565 - 27748634
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| ||||||||||||| ||||||| |||||| |||| ||||||| ||||||||||||||||||||||    
T  27748565 aaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggta 27748634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 36150130 - 36150201
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||||||||| ||||||||||| ||||||||||| ||||||  |||||| |||||||||||||||    
T  36150130 ggaaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggta 36150201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 40480750 - 40480820
Alignment:
Q  162 gaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    |||||| ||||||||||||||||||||| ||  |||||||||||| |  ||||||||||||||||||||||    
T  40480750 gaaaatgttacatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggta 40480820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 1078229 - 1078286
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagg 220  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||||| ||||||||||    
T  1078229 aaaatgttacatgaacaccctttattcctgcacctcattgtacacctaatgtattagg 1078286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 9434124 - 9434195
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||| || ||||| | |||||||||| |||| |||||||| |||||||||    
T  9434124 ggaaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggta 9434195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 10457992 - 10457921
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||||||||||||| |||| || ||||||| |||||||||| |||| |||| |||||||||||||    
T  10457992 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggta 10457921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 51757593 - 51757660
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    |||||||||||||| ||||||||||| || ||||||| ||||||||||||||| |||| ||| |||||    
T  51757593 ggaaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacatttt 51757660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 53273784 - 53273713
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||| ||||||| | |||||||||| ||| ||||||||| | |||||||||||||||||||||||    
T  53273784 ggaaaatgttatatgaacatcatttattcctatacctcattgtacatcccatgtattagggatattttggta 53273713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 53581956 - 53581890
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||| |||||||||||| |||||||| ||||| |||||||||| |  |||||||||||||||||||    
T  53581956 aaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttg 53581890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 34791829 - 34791896
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||||| |||||||||||||||||| || ||||||  |||||| |||||||| |||||||| |||||    
T  34791829 ggaaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacatttt 34791896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 52628077 - 52628006
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||| ||||||||||||| || |||| || ||||||||||||||| |||| | |||||||||||    
T  52628077 ggaaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggta 52628006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 52629840 - 52629876
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccc 197  Q
    ||||||||||||||||||||| |||||||||||||||    
T  52629840 ggaaaatattacatgaacaccttttattcctacaccc 52629876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 25996268 - 25996339
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||| || |||| |  |||||||||| ||| ||||| ||| |||||||||    
T  25996268 ggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggta 25996339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 51249323 - 51249379
Alignment:
Q  176 aacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||||||||||   || |||||| ||||||||||| |||| |||||||||||||    
T  51249323 aacaccctttattcacccaacccattatacacctcatgcattaaggatattttggta 51249379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 43571186 - 43571115
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  43571186 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggta 43571115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 5489776 - 5489847
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||    
T  5489776 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggta 5489847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 48499062 - 48498991
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  48499062 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggta 48498991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 24769599 - 24769528
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| || |||||||||| |||||| |||||| |||||||||||| |||||||||||||||||||||||    
T  24769599 ggaaaatgtttcatgaacaccttttatttctacactccattgtacaccccatgtattagggatattttggta 24769528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 50448360 - 50448293
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||||| |||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||||    
T  50448360 ggaaaatgttacatgaacactctttatttctacactccattgtacaccttatgtattagggatatttt 50448293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 750405 - 750337
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||||| |||| |||||||||||  |||||||||||||||||||||| ||||||| ||||||||||||    
T  750405 ggaaaatgttacgtgaacacccttatttcctacaccccattgtacaccccatgtatcagggatattttg 750337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 37814778 - 37814849
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||| |||||||||||||| |||| | ||||||||||| ||||||||| |||||||||||||    
T  37814778 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggta 37814849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 44112677 - 44112748
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||||| |||| |||||||| |||||||||    
T  44112677 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggta 44112748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 48119628 - 48119699
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||||| |||| |||| |||||||||||||    
T  48119628 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggta 48119699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 35003294 - 35003365
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||||| |||  |||| |||||||||||||    
T  35003294 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggta 35003365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 7447828 - 7447893
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||  |||||||||    
T  7447828 aaaatgttacatgaacatcctttattcctacatcccattgtacacc-catgtattacagatattttg 7447893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 14427347 - 14427404
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtatta 218  Q
    ||||||| |||||||||||||||||| || ||||||| ||||||||||||||| ||||    
T  14427347 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 23989624 - 23989552
Alignment:
Q  161 ggaaaatattacatgaacacccttt-attcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||||||||||||||||| |||| ||||| | |||||| |||  ||||||||||||||||||||||    
T  23989624 ggaaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggta 23989552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 4401336 - 4401399
Alignment:
Q  170 tacatgaacacccttt-attcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||||||| |||| ||||||||||  ||||||||||| |||||||||| ||||||||||||    
T  4401336 tacatgaacactcttttattcctacacttcattgtacaccccatgtattagagatattttggta 4401399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 38335918 - 38335989
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||| || ||||||  |||||||| | |||| |||| |||||||||||||    
T  38335918 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggta 38335989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 41065153 - 41065224
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||| || |||||||  ||||||||| |||| |||||||  |||||||||    
T  41065153 ggaaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggta 41065224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 2497660 - 2497591
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| |||||| |||||| ||||||| ||||  |||||||||||| ||| ||||| |||||||||||||    
T  2497660 aaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggta 2497591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 35000213 - 35000145
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||||| ||||||||||||| |||| || ||||| | |||||| || |||||||||||||| ||||||    
T  35000213 ggaaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttg 35000145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 38113295 - 38113224
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||| |||||||||||||| || ||||||| |||||||||| |||| ||||  || |||||||||    
T  38113295 ggaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggta 38113224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 45639832 - 45639761
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||| ||||| || |||| || |||||||||| |||  |||| |||||||||||||    
T  45639832 ggaaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggta 45639761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 46168383 - 46168454
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||| || || | || ||||||||||  ||| |||| |||||||||||||    
T  46168383 ggaaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggta 46168454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 16096747 - 16096817
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggt 231  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  16096747 ggaaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttggt 16096817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 1750414 - 1750481
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  1750414 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttt 1750481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 12302353 - 12302286
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  12302353 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttt 12302286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 19047158 - 19047228
Alignment:
Q  162 gaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    |||||| ||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||    
T  19047158 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggta 19047228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 43490499 - 43490430
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||||||    
T  43490499 aaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggta 43490430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 30838627 - 30838703
Alignment:
Q  156 ttgtcggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    |||| ||||||| |||||||||||||||||||| ||||| |  |||||||||| |||||||||||||||||||||||    
T  30838627 ttgtaggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggta 30838703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 33229310 - 33229373
Alignment:
Q  170 tacatgaacacccttt-attcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    |||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  33229310 tacatgaacacccttttattcctacacctcattgtacaccccatgtattagggatattttggta 33229373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 43114557 - 43114628
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||||| |||| |||||||| |||||||||    
T  43114557 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggta 43114628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 43335863 - 43335792
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||| ||||||| | |||||||||||||| ||||||||| | |||||||||||||||||||||||    
T  43335863 ggaaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggta 43335792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 11825752 - 11825683
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| |||||||||||||||||| || ||||||| |||||||||| |||| |||||||| |||||||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggta 11825683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 4764826 - 4764755
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||| |||||| ||||||||||||||| |||||||||| |||||||||   |||||||||||    
T  4764826 ggaaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggta 4764755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 12415560 - 12415489
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||| || ||||||  |||||||||| |||| |||||||| |||||||||    
T  12415560 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggta 12415489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 12427620 - 12427549
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||| || ||||||  |||||||||| |||| |||||||| |||||||||    
T  12427620 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggta 12427549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 18491705 - 18491776
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||| || ||||||| ||||||||||||||| |||| | | |||||||||    
T  18491705 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggta 18491776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 41282072 - 41282006
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||| |||||||||||||||||| || ||||||| |||||||||| |||| |||||||| ||||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttg 41282006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 16803968 - 16804036
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||| | |||| |||||||| ||||||    
T  16803968 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttg 16804036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 16843250 - 16843318
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||| | |||| |||||||| ||||||    
T  16843250 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttg 16843318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 42849946 - 42849907
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccat 200  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  42849946 ggaaaatgttacatgaacaccctttattcctacaccccat 42849907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 966934 - 966877
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtatta 218  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||||| |||| ||||    
T  966934 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcatta 966877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 14285676 - 14285747
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    |||||||||||||  ||||||||||| || ||||||| ||||||||||  || |||||  ||||||||||||    
T  14285676 ggaaaatattacacaaacaccctttaatcatacaccctattgtacaccctatatattaaagatattttggta 14285747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 34817875 - 34817824
Alignment:
Q  162 gaaaatattacatgaacaccctttattcctacaccccattgtacacctcatg 213  Q
    |||||| |||||||||||||||||||||  ||||| ||||||||||| ||||    
T  34817875 gaaaatgttacatgaacaccctttattcacacacctcattgtacaccccatg 34817824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 7070418 - 7070459
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgta 204  Q
    ||||| ||||||||||||||||||||| |||| |||||||||    
T  7070418 aaaatgttacatgaacaccctttattcatacatcccattgta 7070459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 13780835 - 13780767
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||||| |||||| |||||  |||||||  ||||| ||||||||||| |||  |||||||||||||||    
T  13780835 ggaaaatgttacatcaacacattttattcacacacctcattgtacaccccatacattagggatattttg 13780767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 36168662 - 36168594
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||||||||||||||||||| |||||||  | || ||||||||||| | ||| | |||||| ||||||    
T  36168662 ggaaaatattacatgaacaccatttattcacatactccattgtacactttatgcactagggacattttg 36168594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 30912660 - 30912591
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  30912660 aaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggta 30912591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 29705362 - 29705430
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  29705362 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttg 29705430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 2166063 - 2165992
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  2166063 ggaaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggta 2165992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 11582766 - 11582837
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||    
T  11582766 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggta 11582837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 36743583 - 36743512
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||    
T  36743583 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggta 36743512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 42295197 - 42295266
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||    
T  42295197 aaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggta 42295266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 42699259 - 42699324
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  42699259 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttt 42699324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 2546996 - 2547063
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||||| |||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||    
T  2546996 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatatttt 2547063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 30660842 - 30660771
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||| ||||| |||||||||||||  ||||||||||||||||||||||    
T  30660842 ggaaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggta 30660771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 20148762 - 20148831
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| |||||| |||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||    
T  20148762 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggta 20148831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 1375542 - 1375613
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||||||||||||| ||||||| ||||||| |||||||||| ||| |||||||||||||||||||    
T  1375542 ggaaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggta 1375613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 5754903 - 5754974
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||||| | ||| |||||||||||||||||||    
T  5754903 ggaaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggta 5754974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 42197535 - 42197464
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||||||||||||| |||||||||||||||||||| ||||   ||||||||||||||||||||||    
T  42197535 ggaaaatgttacatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggta 42197464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 45397317 - 45397383
Alignment:
Q  162 gaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    |||||| |||| |||||||||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  45397317 gaaaatgttacgtgaacaccctttattcctacaccccattctacaccctatgtattagggatatttt 45397383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 29801048 - 29800979
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| |||||| |||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||    
T  29801048 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggta 29800979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 31384664 - 31384735
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| ||||||||||||||||||||||| ||||  | |||||||||| ||||||||||| |||||||||||    
T  31384664 ggaaagtattacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggta 31384735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 35181516 - 35181587
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||||| |||| |||||||| |||||||||    
T  35181516 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggta 35181587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 26125637 - 26125706
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| |||||| |||||||||||||| ||||  ||||||||||||  ||||||||||||||||||||||    
T  26125637 aaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggta 26125706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 34304788 - 34304859
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||||||||||| |||||| || ||||||| |||||||||| |||| |||||||| |||||||||    
T  34304788 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggta 34304859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 18066818 - 18066751
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||||| |||||||||||||||||| || ||||  | |||||||| | |||||||||||||||||||    
T  18066818 ggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatatttt 18066751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 37425945 - 37426008
Alignment:
Q  88 ggcaggtgtattgcaaatcaatgttgttgtacacctgtagtataagtgtaccagcttctcaaag 151  Q
    |||| |||| ||||||||||||||||||||| ||||| | ||||| || |||||||||||||||    
T  37425945 ggcaagtgtgttgcaaatcaatgttgttgtagacctgcaatataactgcaccagcttctcaaag 37426008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 40528735 - 40528666
Alignment:
Q  161 ggaaaatattacatgaacacccttt-attcctacaccccattgtacacctcatgtattagggatattttg 229  Q
    |||||||| |||||||||||||||| ||||  | ||||||||||||||| ||| ||||||||| ||||||    
T  40528735 ggaaaataatacatgaacacccttttattcacaaaccccattgtacaccccatatattagggacattttg 40528666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 28977146 - 28977181
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacacc 196  Q
    ||||||| ||||||||||||||||||||||||||||    
T  28977146 ggaaaatgttacatgaacaccctttattcctacacc 28977181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 33630091 - 33630026
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||| ||||| |||||||||||| || |||||| |||||||||||  ||| |||||||| |||||    
T  33630091 aaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacatttt 33630026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 33855144 - 33855072
Alignment:
Q  160 cggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  33855144 cggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggta 33855072  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 2614749 - 2614678
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||    
T  2614749 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggta 2614678  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 22512305 - 22512376
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  22512305 ggaaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggta 22512376  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 7617133 - 7617204
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||||||||||||||||||||| ||||| ||||| |||||| |||||||||||||||||||||||    
T  7617133 ggaaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggta 7617204  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 18033982 - 18034049
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  18033982 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttt 18034049  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 41334764 - 41334692
Alignment:
Q  160 cggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    |||||||| ||||||||||||||||||||| |||||| |||| ||||||  ||||||||||||||||||||||    
T  41334764 cggaaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggta 41334692  T

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Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 33801469 - 33801536
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||||  |||||||||||||||||||    
T  33801469 ggaaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatatttt 33801536  T

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Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 39785635 - 39785681
Alignment:
Q  103 aatcaatgttgttgtacacctgtagtataagtgtaccagcttctcaa 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39785635 aatcaatgttgttgtacacctgtagtataagtgtaccagcttctcaa 39785681  T

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Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 5256997 - 5257066
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| |||||| |||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||    
T  5256997 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggta 5257066  T

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Target: chr5; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 32473494 - 32473423
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||||||||||||||| || ||||||  |||||||||| |||| ||||||||||||||||||    
T  32473494 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggta 32473423  T

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Target: chr5; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 38470579 - 38470650
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| |||||| |||||||||||||| ||||  |||||||||||| ||||||||| |||||||||||||    
T  38470579 ggaaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggta 38470650  T

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Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 25915085 - 25915029
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattag 219  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||  |||||||||    
T  25915085 aaaatgttacatgaacaccctttattcctacacctcattgtacacccaatgtattag 25915029  T

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Target: scaffold0038 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 112656 - 112726
Alignment:
Q  162 gaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    |||||| ||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||    
T  112656 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggta 112726  T

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Target: scaffold0385 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 11251 - 11322
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| | |||||||||| |||||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  11251 ggaaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggta 11322  T

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Target: scaffold0187 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 14288 - 14221
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| |  ||||||||||||||||||    
T  14288 ggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttt 14221  T

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Target: scaffold0187; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 24616 - 24549
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatatttt 228  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| |  ||||||||||||||||||    
T  24616 ggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttt 24549  T

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Target: scaffold0157 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 23521 - 23450
Alignment:
Q  161 ggaaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||| | |||||||||| ||||||||||||    
T  23521 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggta 23450  T

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Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 45817 - 45748
Alignment:
Q  163 aaaatattacatgaacaccctttattcctacaccccattgtacacctcatgtattagggatattttggta 232  Q
    ||||| |||||||||||||||||| || ||||||| |||||||| |  |||||||| |||||||||||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggta 45748  T

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