View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17292_low_16 (Length: 224)
Name: NF17292_low_16
Description: NF17292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17292_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 3196105 - 3196313
Alignment:
| Q |
1 |
aaactatttttatgagatcagcacatagatgctttctccaagattctcaaatcactgctaaaatgttggttctaacttctaataaaaacttctagtagag |
100 |
Q |
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| T |
3196105 |
aaactatttttatgagatcagcacatagatgctttctccaagattctcaaatcaccgctaaaatgttggttctaacttctaataaaaacttctagtagag |
3196204 |
T |
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| Q |
101 |
aaagtcttctatccaacataagaaacctttcaaaacttgcacgataggattccaaaacattttccaatgtcccaataaaaaagaacattattcaaggtac |
200 |
Q |
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| T |
3196205 |
aaagtcttctatccaacataagaaacctttcaaaacttgcatgataggattccaaaacattttccaatgtcccaataaaaaagaacattattcaaggtac |
3196304 |
T |
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| Q |
201 |
atccttgtt |
209 |
Q |
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||||||||| |
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| T |
3196305 |
atccttgtt |
3196313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 3191884 - 3191934
Alignment:
| Q |
6 |
atttttatgagatcagcacatagatgctttctccaagattctcaaatcact |
56 |
Q |
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| T |
3191884 |
atttttatgagatcatcacatagatgctttctccaagattctcaaatcact |
3191934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 3192050 - 3192097
Alignment:
| Q |
159 |
attttccaatgtcccaataaaaaagaacattattcaaggtacatcctt |
206 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
3192050 |
attttctaatgtcccaataaaaaagaacattattcaaggtatatcctt |
3192097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 3191935 - 3192012
Alignment:
| Q |
75 |
acttctaataaaaacttctagtagagaaagtcttctatccaacataagaaacctttcaaaacttgcacgataggattccaa |
155 |
Q |
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||||||||||||||||| || ||||| |||||||||||||||| ||||||| || | ||||||||| |||||| |||||| |
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| T |
3191935 |
acttctaataaaaacttttaatagag-aagtcttctatccaacgtaagaaa--ttaccaaacttgcatgataggtttccaa |
3192012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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