View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17292_low_6 (Length: 365)
Name: NF17292_low_6
Description: NF17292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17292_low_6 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 11 - 365
Target Start/End: Complemental strand, 38180711 - 38180357
Alignment:
| Q |
11 |
catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180711 |
catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaaacgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
38180612 |
T |
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| Q |
111 |
tacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180611 |
tacttacacactcgccttaccaacaaatcaaccatctcgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg |
38180512 |
T |
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| Q |
211 |
aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180511 |
aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg |
38180412 |
T |
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| Q |
311 |
cttagcctacggtatcatcattccttgggtcgcaaaggtggcacgtgagcttcac |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180411 |
cttagcctacggtatcatcattccttgggtcgcaaaggtggcacgtgagcttcac |
38180357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 365
Target Start/End: Complemental strand, 38185380 - 38185026
Alignment:
| Q |
11 |
catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
38185380 |
catcatcacatacccactacacggtcacataaaccctgcactccaattcgccaagcgtctcatttctttcggcgcacaagtcacttttgctacaactatc |
38185281 |
T |
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| Q |
111 |
tacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg |
210 |
Q |
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|||||||||||| |||||| ||||||| |||||||||| ||||| |||||||||||||||||||| ||| ||||||| || ||| ||||||||||||| |
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| T |
38185280 |
tacttacacactggccttatcaacaaaccaaccatcccaggcctctccttcgccaccttctctgatggctacgacgacggtaaaaatttcgaaagcaacg |
38185181 |
T |
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| Q |
211 |
aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg |
310 |
Q |
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||||||| || ||||| || ||||||||| ||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38185180 |
aagacttcatcgcctacaggtccgagcttaagtgccactgctcagaatttctaacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg |
38185081 |
T |
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| Q |
311 |
cttagcctacggtatcatcattccttgggtcgcaaaggtggcacgtgagcttcac |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38185080 |
cttagcctacggtatcatcattccttgggtcgcaaaggtggcacgtgagcttcac |
38185026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 11 - 314
Target Start/End: Complemental strand, 38170897 - 38170594
Alignment:
| Q |
11 |
catcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
110 |
Q |
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|||||| |||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38170897 |
catcataacatacccactacaaggtcacataaaccctgccctccaattcaccaagcgtctcatttctttgggcgcaaaagtcacttttgctaccactatc |
38170798 |
T |
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| Q |
111 |
tacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacg |
210 |
Q |
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||||| ||| |||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||| || | ||||| | || ||| |
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| T |
38170797 |
cacttatacagtcgccttatcaacaaaccaaccatcccgggcctctccttcgccaccttctctgacggctatgacgacggtcaaaaatcctttggcgacg |
38170698 |
T |
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| Q |
211 |
aagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttg |
310 |
Q |
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||||| | ||| ||||| || |||| ||| ||| ||| |||| |||||||||||||||||||| |||||| |||||| ||| || |||||||||||| |
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| T |
38170697 |
aagacatcgtctcctacatgtctgagtttacgcgtcgcggctcagaatttctcacaaatatcattctctcctccaaacaagaaaatcatccattcacttg |
38170598 |
T |
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| Q |
311 |
ctta |
314 |
Q |
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|||| |
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| T |
38170597 |
ctta |
38170594 |
T |
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