View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17292_low_7 (Length: 346)
Name: NF17292_low_7
Description: NF17292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17292_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 21 - 337
Target Start/End: Original strand, 38180064 - 38180380
Alignment:
| Q |
21 |
agtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatctagaacttgaatttgttctttgaaagattgagtagcga |
120 |
Q |
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| T |
38180064 |
agtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatatagaacttgaatttgttctttgaaagattgagtagcga |
38180163 |
T |
|
| Q |
121 |
tagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttga |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180164 |
tagtgtatatatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttga |
38180263 |
T |
|
| Q |
221 |
tttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagc |
320 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180264 |
tttgtttgtgacgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaactgttgcagcttgaatccataatagcgctgatgggaggtgaagc |
38180363 |
T |
|
| Q |
321 |
tcacgtgccacctttgc |
337 |
Q |
| |
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||||||||||||||||| |
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| T |
38180364 |
tcacgtgccacctttgc |
38180380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 21 - 337
Target Start/End: Original strand, 38184733 - 38185049
Alignment:
| Q |
21 |
agtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatctagaacttgaatttgttctttgaaagattgagtagcga |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38184733 |
agtgcctctaattcaaactcttcaacggtgttaacaagtactgtagggttggtttcttcatctagaacttgaatttgttctttgaaagatcgagtagcga |
38184832 |
T |
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| Q |
121 |
tagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttga |
220 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184833 |
tagtatatatatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttga |
38184932 |
T |
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| Q |
221 |
tttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagc |
320 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184933 |
tttgtttgtgatgtagtcaccatgttcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagc |
38185032 |
T |
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| Q |
321 |
tcacgtgccacctttgc |
337 |
Q |
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||||||||||||||||| |
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| T |
38185033 |
tcacgtgccacctttgc |
38185049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 32 - 334
Target Start/End: Original strand, 38170261 - 38170563
Alignment:
| Q |
32 |
ttcaaactcttcaacggtgttaacaagtactttagggttggtttcttcat-ctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatat |
130 |
Q |
| |
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||||||||| ||||||||||| ||||||||| | |||||| ||||||||| | | |||| ||||||| ||||||| |||| || ||| | ||||||| | |
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| T |
38170261 |
ttcaaactcctcaacggtgttcacaagtactcttgggttgatttcttcattcaacaact-gaatttgctctttgagagatggaagagcaaaagtgtatgt |
38170359 |
T |
|
| Q |
131 |
atttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtg |
230 |
Q |
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|||||||| |||||||||||||||||||| || |||| |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||| |
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| T |
38170360 |
atttgaagccaataaaaaagagggaaggtcgcggcttttaagagagaatgacaatcccggtaatgatattaaacacgtttcatcctttgatttgtttgtg |
38170459 |
T |
|
| Q |
231 |
atgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgcca |
330 |
Q |
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||||||||||| || |||||||||||||||||| | |||||||| |||||||| ||||||||||| || || | ||||||||||||||||||| |||||| |
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| T |
38170460 |
atgtagtcaccgtgttcatgaaagtaataatagaatatatcaaacaccgttgctgcttgaatccacaacagtgttgatgggaggtgaagctcatgtgcca |
38170559 |
T |
|
| Q |
331 |
cctt |
334 |
Q |
| |
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|||| |
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|
| T |
38170560 |
cctt |
38170563 |
T |
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