View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17293_high_11 (Length: 374)

Name: NF17293_high_11
Description: NF17293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17293_high_11
NF17293_high_11
[»] chr8 (15 HSPs)
chr8 (1-320)||(9036545-9036864)
chr8 (213-257)||(11879601-11879645)
chr8 (213-257)||(11897017-11897061)
chr8 (214-257)||(477132-477175)
chr8 (213-254)||(23136353-23136394)
chr8 (168-220)||(29384086-29384138)
chr8 (214-257)||(5922050-5922093)
chr8 (213-256)||(15294672-15294715)
chr8 (213-256)||(15475041-15475084)
chr8 (173-220)||(17647300-17647347)
chr8 (215-254)||(31424167-31424206)
chr8 (178-219)||(17566402-17566443)
chr8 (162-219)||(24056339-24056395)
chr8 (213-257)||(17646994-17647038)
chr8 (213-257)||(24056652-24056696)
[»] chr4 (10 HSPs)
chr4 (8-92)||(12141610-12141694)
chr4 (213-257)||(5362047-5362091)
chr4 (168-220)||(24719871-24719923)
chr4 (168-219)||(8889521-8889571)
chr4 (168-213)||(7452815-7452860)
chr4 (168-220)||(6346729-6346781)
chr4 (213-257)||(7044728-7044772)
chr4 (213-257)||(8011300-8011344)
chr4 (168-220)||(8743539-8743591)
chr4 (213-257)||(9149819-9149863)
[»] chr3 (16 HSPs)
chr3 (168-220)||(41671482-41671534)
chr3 (213-260)||(3449375-3449422)
chr3 (167-213)||(42697157-42697203)
chr3 (168-220)||(9152760-9152811)
chr3 (213-257)||(27676357-27676401)
chr3 (213-257)||(29067285-29067329)
chr3 (173-220)||(22137580-22137627)
chr3 (173-220)||(27676739-27676786)
chr3 (213-254)||(42696870-42696911)
chr3 (168-220)||(3449084-3449136)
chr3 (213-253)||(17064326-17064366)
chr3 (213-257)||(20756040-20756084)
chr3 (176-220)||(21963734-21963778)
chr3 (176-220)||(21986170-21986214)
chr3 (168-220)||(25870096-25870148)
chr3 (213-257)||(28745771-28745815)
[»] chr7 (18 HSPs)
chr7 (213-257)||(5715291-5715335)
chr7 (213-257)||(44944933-44944977)
chr7 (213-259)||(5058528-5058574)
chr7 (167-220)||(10285676-10285729)
chr7 (213-257)||(21846509-21846553)
chr7 (213-257)||(22687748-22687792)
chr7 (173-220)||(14055560-14055606)
chr7 (173-220)||(14365588-14365634)
chr7 (173-220)||(22687046-22687093)
chr7 (178-220)||(1977851-1977893)
chr7 (173-219)||(8343581-8343627)
chr7 (173-219)||(8346245-8346291)
chr7 (220-257)||(7730433-7730470)
chr7 (214-262)||(4247352-4247400)
chr7 (213-257)||(8330129-8330173)
chr7 (213-257)||(11326387-11326431)
chr7 (213-257)||(26281393-26281437)
chr7 (213-257)||(39182261-39182305)
[»] chr6 (10 HSPs)
chr6 (213-257)||(6943544-6943588)
chr6 (213-257)||(15528194-15528238)
chr6 (168-220)||(23898113-23898165)
chr6 (213-257)||(7223520-7223564)
chr6 (213-257)||(7918465-7918509)
chr6 (213-257)||(17103203-17103247)
chr6 (213-257)||(17543824-17543868)
chr6 (213-257)||(5422832-5422876)
chr6 (213-257)||(17250058-17250102)
chr6 (213-257)||(30912496-30912540)
[»] chr1 (14 HSPs)
chr1 (213-257)||(25146852-25146896)
chr1 (213-256)||(19010030-19010073)
chr1 (213-251)||(16125542-16125580)
chr1 (168-220)||(12513574-12513626)
chr1 (213-257)||(30619076-30619120)
chr1 (168-220)||(30619244-30619295)
chr1 (213-258)||(42180149-42180194)
chr1 (213-257)||(9327299-9327343)
chr1 (213-257)||(9352147-9352191)
chr1 (213-257)||(9955119-9955163)
chr1 (213-257)||(17056083-17056127)
chr1 (213-257)||(21846352-21846396)
chr1 (213-257)||(23528657-23528701)
chr1 (213-257)||(47785793-47785837)
[»] chr5 (7 HSPs)
chr5 (213-259)||(23172516-23172562)
chr5 (175-220)||(19979871-19979916)
chr5 (213-257)||(43234869-43234913)
chr5 (213-254)||(24106645-24106686)
chr5 (213-257)||(18051614-18051658)
chr5 (213-257)||(20923719-20923763)
chr5 (213-257)||(22645803-22645847)
[»] chr2 (3 HSPs)
chr2 (214-257)||(15266083-15266126)
chr2 (168-220)||(1690509-1690562)
chr2 (213-257)||(31238061-31238105)
[»] scaffold0534 (1 HSPs)
scaffold0534 (178-219)||(974-1015)


Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 9036545 - 9036864
Alignment:
Q  1 tgagaatgtattttgaacaatttggagagatcttagaagctgttgttatcactgataagtatactggaagatctaaaggttatggttttgtaagtccatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9036545 tgagaatgtattttgaacaatttggagagatcttagaagctgttgttatcactgataagtatactggaagatctaaaggttatggttttgtaagtccatt 9036644  T
Q  101 tttcttttccttatatttattttactatgcttctcacatttgtgcatagtttatatttacttatatacaagcttgtcaaaatcaggattttgcttctggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9036645 tttcttttccttatatttattttactatgcttctcacatttgtgcatagtttatatttacttatatacaagcttgtcaaaatcaggattttgcttccggt 9036744  T
Q  201 cgaaagagaagagcaaaatcctgaattttaggatttaagtcaggtttttgacaacaaatgtttatatattccatttgtggttatatattaattatatgat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  9036745 cgaaagagaagagcaaaatcctgaattttaggatttaagtcaggtttttgacaacaaatgtttacatattccatttgtggttatatactaattatatgat 9036844  T
Q  301 cttagaggatgattttgcaa 320  Q
    ||||||||||||||||||||    
T  9036845 cttagaggatgattttgcaa 9036864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 11879645 - 11879601
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||||||||||||||||||||||||||  ||||||||||||    
T  11879645 gcaaaatcctgaattttaggatttaagtcagaattttgacaacaa 11879601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 11897061 - 11897017
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||||||||||||||||||||||||||  ||||||||||||    
T  11897061 gcaaaatcctgaattttaggatttaagtcagaattttgacaacaa 11897017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 477132 - 477175
Alignment:
Q  214 caaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  477132 caaaatcctggattttaggatttaagtcaggattttgacaacaa 477175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 23136394 - 23136353
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaa 254  Q
    ||||||||||||||||||||||||||||| || |||||||||    
T  23136394 gcaaaatcctgaattttaggatttaagtcgggattttgacaa 23136353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 29384086 - 29384138
Alignment:
Q  168 caagcttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    |||| ||||||||||| |||||||||||| |||||||||| ||||| ||||||    
T  29384086 caaggttgtcaaaatcgggattttgcttcaggtcgaaagaaaagagaaaaatc 29384138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 5922093 - 5922050
Alignment:
Q  214 caaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||||| ||||||||||||||||| || ||||||||||||    
T  5922093 caaaatcctggattttaggatttaagtcgggattttgacaacaa 5922050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 15294715 - 15294672
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaaca 256  Q
    ||||||||||||||||||||||||||||| || |||| ||||||    
T  15294715 gcaaaatcctgaattttaggatttaagtcgggatttttacaaca 15294672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 15475084 - 15475041
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaaca 256  Q
    ||||||||||||||||||||||||||||| || |||| ||||||    
T  15475084 gcaaaatcctgaattttaggatttaagtcgggatttttacaaca 15475041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 17647347 - 17647300
Alignment:
Q  173 ttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    |||| |||||| |||||||||||| |||||||||||| ||||||||||    
T  17647347 ttgttaaaatcgggattttgcttcaggtcgaaagagatgagcaaaatc 17647300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 31424206 - 31424167
Alignment:
Q  215 aaaatcctgaattttaggatttaagtcaggtttttgacaa 254  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  31424206 aaaatcctgaattttagaatttaagtcaggattttgacaa 31424167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 17566443 - 17566402
Alignment:
Q  178 aaaatcaggattttgcttctggtcgaaagagaagagcaaaat 219  Q
    ||||||||||||||||||| |||| |||| ||||||||||||    
T  17566443 aaaatcaggattttgcttcaggtcaaaagggaagagcaaaat 17566402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 24056339 - 24056395
Alignment:
Q  162 tatatacaagcttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaat 219  Q
    |||||||||| ||||||||| |  ||||||||||| ||||||||| ||||||||||||    
T  24056339 tatatacaag-ttgtcaaaaccgagattttgcttcaggtcgaaagggaagagcaaaat 24056395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 17647038 - 17646994
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||||||||||||| |||||||||| |  ||||||||||||    
T  17647038 gcaaaatcctgaattttatgatttaagtcggaattttgacaacaa 17646994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 24056652 - 24056696
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||| |||||||||||||||||| | |||||| |||||    
T  24056652 gcaaaatcctggattttaggatttaagtcaagattttgataacaa 24056696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 12141610 - 12141694
Alignment:
Q  8 gtattttgaacaatttggagagatcttagaagctgttgttatcactgataagtatactggaagatctaaaggttatggttttgta 92  Q
    ||||||||| |||||||| |||||||| |||||||||||||||||||| ||    ||||||||||| ||||| ||||| ||||||    
T  12141610 gtattttgagcaatttggtgagatcttggaagctgttgttatcactgacaaagccactggaagatccaaaggctatggatttgta 12141694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 5362047 - 5362091
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  5362047 gcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 5362091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 24719923 - 24719871
Alignment:
Q  168 caagcttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    |||| |||||||||||  ||||||||||| ||||||||| |||||||||||||    
T  24719923 caaggttgtcaaaatcgagattttgcttcaggtcgaaagggaagagcaaaatc 24719871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 8889571 - 8889521
Alignment:
Q  168 caagcttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaat 219  Q
    |||| ||||||||||| |||||||||||| ||||||||||| ||||||||||    
T  8889571 caaggttgtcaaaatcgggattttgcttcaggtcgaaagag-agagcaaaat 8889521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 7452860 - 7452815
Alignment:
Q  168 caagcttgtcaaaatcaggattttgcttctggtcgaaagagaagag 213  Q
    |||| |||||||||| ||||||||||||| ||||||||| ||||||    
T  7452860 caaggttgtcaaaattaggattttgcttcaggtcgaaagggaagag 7452815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 6346729 - 6346781
Alignment:
Q  168 caagcttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    |||| ||||||||||| | | |||||||| ||||||||| |||||||||||||    
T  6346729 caaggttgtcaaaatcggaaatttgcttcaggtcgaaagggaagagcaaaatc 6346781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 7044772 - 7044728
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||| || ||||||||||||||||| || ||||||||||||    
T  7044772 gcaaaatcatggattttaggatttaagtcgggattttgacaacaa 7044728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 8011300 - 8011344
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||||||||||||||||||| |||  || ||||||||||||    
T  8011300 gcaaaatcctgaattttaggatttgagttgggattttgacaacaa 8011344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 8743539 - 8743591
Alignment:
Q  168 caagcttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    |||| ||||||||||| |||||| ||||||||||||| ||||  |||||||||    
T  8743539 caaggttgtcaaaatccggatttagcttctggtcgaatgagactagcaaaatc 8743591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 9149819 - 9149863
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||||| |||||||||||||||||| || ||||||| ||||    
T  9149819 gcaaaatcctaaattttaggatttaagtcgggattttgaccacaa 9149863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 41671534 - 41671482
Alignment:
Q  168 caagcttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    |||| ||||||||||| |||||||||||| |||||||||||||||||||||||    
T  41671534 caaggttgtcaaaatcgggattttgcttcaggtcgaaagagaagagcaaaatc 41671482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 3449375 - 3449422
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaaatg 260  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||    
T  3449375 gcaaaatcctgaattttaggatttaagtcgggattttgacaacaaatg 3449422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 42697203 - 42697157
Alignment:
Q  167 acaagcttgtcaaaatcaggattttgcttctggtcgaaagagaagag 213  Q
    ||||| |||||||||||||||||||||||| ||||||| ||||||||    
T  42697203 acaaggttgtcaaaatcaggattttgcttcaggtcgaatgagaagag 42697157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 9152760 - 9152811
Alignment:
Q  168 caagcttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    |||| |||||||||||||||||||||||  |||||||||||||||| ||||||    
T  9152760 caaggttgtcaaaatcaggattttgctt-aggtcgaaagagaagagtaaaatc 9152811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 27676401 - 27676357
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||||    
T  27676401 gcaaaatcctgcattttacgatttaagtcaggattttgacaacaa 27676357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 29067329 - 29067285
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||||||||||| ||||||||| || ||||||||||||    
T  29067329 gcaaaatcctgaattttagaatttaagtcgggattttgacaacaa 29067285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 22137627 - 22137580
Alignment:
Q  173 ttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    |||||||||||  ||||||| ||| |||||||||||||||||||||||    
T  22137627 ttgtcaaaatcgagattttgtttcaggtcgaaagagaagagcaaaatc 22137580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 27676786 - 27676739
Alignment:
Q  173 ttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    |||| |||||||||||||||||||  |||||||| |||||||||||||    
T  27676786 ttgttaaaatcaggattttgcttcaagtcgaaagggaagagcaaaatc 27676739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 42696911 - 42696870
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaa 254  Q
    |||||||||||||||||| |||||||||| || |||||||||    
T  42696911 gcaaaatcctgaattttatgatttaagtcgggattttgacaa 42696870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 3449084 - 3449136
Alignment:
Q  168 caagcttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    |||| ||||||||||  |||||||||||  ||| |||||||||||||||||||    
T  3449084 caaggttgtcaaaattgggattttgctttaggttgaaagagaagagcaaaatc 3449136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 17064366 - 17064326
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgaca 253  Q
    |||||||||||||||||| |||||||||| || ||||||||    
T  17064366 gcaaaatcctgaattttaagatttaagtcgggattttgaca 17064326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 20756084 - 20756040
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||||||||||  ||||||||| || ||||||||||||    
T  20756084 gcaaaatcctgaattttataatttaagtcgggattttgacaacaa 20756040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 21963778 - 21963734
Alignment:
Q  176 tcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    ||||||||  ||||||| ||| |||||||||||||||||||||||    
T  21963778 tcaaaatcgagattttgtttcaggtcgaaagagaagagcaaaatc 21963734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 21986214 - 21986170
Alignment:
Q  176 tcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    ||||||||  ||||||| ||| |||||||||||||||||||||||    
T  21986214 tcaaaatcgagattttgtttcaggtcgaaagagaagagcaaaatc 21986170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 25870096 - 25870148
Alignment:
Q  168 caagcttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    |||| |||||||||||  ||||||||||  |||||||||||||||| ||||||    
T  25870096 caaggttgtcaaaatcgagattttgctttaggtcgaaagagaagagtaaaatc 25870148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 28745815 - 28745771
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||||| ||||||||||||||| || || ||||||||||||    
T  28745815 gcaaaatcctaaattttaggatttaaatcgggattttgacaacaa 28745771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 5715335 - 5715291
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  5715335 gcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 5715291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 44944933 - 44944977
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  44944933 gcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 44944977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 5058574 - 5058528
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaaat 259  Q
    ||||||| ||||||||||||||||||||| || ||||||||||||||    
T  5058574 gcaaaattctgaattttaggatttaagtcgggattttgacaacaaat 5058528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 10285676 - 10285729
Alignment:
Q  167 acaagcttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    ||||| ||||||||||| ||||||| |||| |||||||||||||||| ||||||    
T  10285676 acaaggttgtcaaaatcgggattttacttcaggtcgaaagagaagagaaaaatc 10285729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 21846509 - 21846553
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||||||||||| ||||||||| || ||||||||||||    
T  21846509 gcaaaatcctgaattttagaatttaagtcgggattttgacaacaa 21846553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 22687748 - 22687792
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||    
T  22687748 gcaaattcctgaattttaggatttaagtcgggattttgacaacaa 22687792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 14055606 - 14055560
Alignment:
Q  173 ttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    ||||||||||| |||||||||||| |||||||||||| ||||||||||    
T  14055606 ttgtcaaaatc-ggattttgcttcaggtcgaaagagatgagcaaaatc 14055560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 14365634 - 14365588
Alignment:
Q  173 ttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    ||||||||||| |||||||||||| |||||||||||| ||||||||||    
T  14365634 ttgtcaaaatc-ggattttgcttcaggtcgaaagagatgagcaaaatc 14365588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 22687046 - 22687093
Alignment:
Q  173 ttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    |||| |||||| |||||||||||| | |||||||||||||||||||||    
T  22687046 ttgttaaaatcgggattttgcttcagatcgaaagagaagagcaaaatc 22687093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 1977893 - 1977851
Alignment:
Q  178 aaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    ||||||| ||||||||||| |||||||||||||||| ||||||    
T  1977893 aaaatcaagattttgcttcaggtcgaaagagaagagaaaaatc 1977851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 8343581 - 8343627
Alignment:
Q  173 ttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaat 219  Q
    |||| |||||||| |||||||||| ||||||||||||||| ||||||    
T  8343581 ttgttaaaatcagaattttgcttcaggtcgaaagagaagaacaaaat 8343627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 8346245 - 8346291
Alignment:
Q  173 ttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaat 219  Q
    |||| |||||||||||||| |||| ||||||||||||||| ||||||    
T  8346245 ttgttaaaatcaggattttacttccggtcgaaagagaagaacaaaat 8346291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 7730433 - 7730470
Alignment:
Q  220 cctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  7730433 cctggattttaggatttaagtcaggattttgacaacaa 7730470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 4247400 - 4247352
Alignment:
Q  214 caaaatcctgaattttaggatttaagtcaggtttttgacaacaaatgtt 262  Q
    ||||||||||||||||||||||||| |  || |||||||||||| ||||    
T  4247400 caaaatcctgaattttaggatttaaattgggattttgacaacaattgtt 4247352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 8330129 - 8330173
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||| |||||||||| ||||| |||||| ||||||||||||    
T  8330129 gcaaaatcatgaattttagaatttaggtcaggattttgacaacaa 8330173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 11326431 - 11326387
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||||| |||||||||||||||||  || ||||||||||||    
T  11326431 gcaaaatcctaaattttaggatttaagttgggattttgacaacaa 11326387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 26281393 - 26281437
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||||||||||||| |||||||||| |  ||||||||||||    
T  26281393 gcaaaatcctgaattttatgatttaagtcggaattttgacaacaa 26281437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 39182305 - 39182261
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||  |||||||||||||||||||| ||||| ||||||    
T  39182305 gcaaaatcctagattttaggatttaagtcaggattttgtcaacaa 39182261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 6943544 - 6943588
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  6943544 gcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 6943588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 15528194 - 15528238
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  15528194 gcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 15528238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 23898165 - 23898113
Alignment:
Q  168 caagcttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    |||| ||||||||||| |||||||||||| ||||||| |||||||||||||||    
T  23898165 caagattgtcaaaatcgggattttgcttcaggtcgaatgagaagagcaaaatc 23898113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 7223564 - 7223520
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||||| |||||||||||||||||| || ||||||||||||    
T  7223564 gcaaaatcctaaattttaggatttaagtcgggattttgacaacaa 7223520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 7918465 - 7918509
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||||||||||| ||||||||| || ||||||||||||    
T  7918465 gcaaaatcctgaattttagaatttaagtcgggattttgacaacaa 7918509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 17103247 - 17103203
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||||||||||||| |||||||||| || ||||||||||||    
T  17103247 gcaaaatcctgaattttaagatttaagtcgggattttgacaacaa 17103203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 17543824 - 17543868
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||||||||||||||||||||||||  | ||||||||||||    
T  17543824 gcaaaatcctgaattttaggatttaagtcgagattttgacaacaa 17543868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 5422832 - 5422876
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||| |||||||||| ||||||||| || ||||||||||||    
T  5422832 gcaaaatcatgaattttagtatttaagtcgggattttgacaacaa 5422876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 17250102 - 17250058
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||| ||||||||||||||||| || |||| |||||||    
T  17250102 gcaaaatcctggattttaggatttaagtcgggattttaacaacaa 17250058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 30912496 - 30912540
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||||| |||||||||||||||||  || ||||||||||||    
T  30912496 gcaaaatcctaaattttaggatttaagttgggattttgacaacaa 30912540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 25146852 - 25146896
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||    
T  25146852 gcaaaattctgaattttaggatttaagtcaggattttgacaacaa 25146896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 19010030 - 19010073
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaaca 256  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  19010030 gcaaaatcctgaattttaggatttaagtccggattttgacaaca 19010073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 16125542 - 16125580
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttga 251  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  16125542 gcaaaatcctgaattttaggatttaagtcaggattttga 16125580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 12513626 - 12513574
Alignment:
Q  168 caagcttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    |||| ||||||||||  |||||||||||| |||| ||||||||||||||||||    
T  12513626 caaggttgtcaaaattgggattttgcttcaggtcaaaagagaagagcaaaatc 12513574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 30619120 - 30619076
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||| ||||||||||||||||| || ||||||||||||    
T  30619120 gcaaaatcctggattttaggatttaagtcgggattttgacaacaa 30619076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 30619295 - 30619244
Alignment:
Q  168 caagcttgtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    |||| ||||||||||| ||||||| |||| |||||||||||||||||||||||    
T  30619295 caaggttgtcaaaatcgggatttt-cttcaggtcgaaagagaagagcaaaatc 30619244  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 42180149 - 42180194
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaaa 258  Q
    ||||||||||||||||||| ||||||||  || |||||||||||||    
T  42180149 gcaaaatcctgaattttagaatttaagttgggattttgacaacaaa 42180194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 9327299 - 9327343
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||| ||| ||||||||||||||||||||| |||| |||||||    
T  9327299 gcaaaaccctaaattttaggatttaagtcaggattttaacaacaa 9327343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 9352147 - 9352191
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||| |||| ||||||||||||||||| || ||||||||||||    
T  9352147 gcaaaaccctggattttaggatttaagtcgggattttgacaacaa 9352191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 9955119 - 9955163
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||||| |||||||||||||||||  || ||||||||||||    
T  9955119 gcaaaatcctaaattttaggatttaagttgggattttgacaacaa 9955163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 17056083 - 17056127
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||| |||||||||||||| ||||| ||||||| ||||    
T  17056083 gcaaaatcctggattttaggatttaaatcaggattttgactacaa 17056127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 21846352 - 21846396
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||| |||||||||||||| || || ||||||||||||    
T  21846352 gcaaaatcctggattttaggatttaactcgggattttgacaacaa 21846396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 23528701 - 23528657
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    |||||||||||||||||| |||||||||  || ||||||||||||    
T  23528701 gcaaaatcctgaattttaagatttaagttgggattttgacaacaa 23528657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 47785837 - 47785793
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||||||||||||||||| ||  || ||||||||||||    
T  47785837 gcaaaatcctgaattttaggatttatgttgggattttgacaacaa 47785793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 23172516 - 23172562
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaaat 259  Q
    |||||||||| |||||||||||||||||| || ||||||||||||||    
T  23172516 gcaaaatcctaaattttaggatttaagtcgggattttgacaacaaat 23172562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 19979916 - 19979871
Alignment:
Q  175 gtcaaaatcaggattttgcttctggtcgaaagagaagagcaaaatc 220  Q
    ||||||||| |||||||||||| |||| ||||||||||||||||||    
T  19979916 gtcaaaatcgggattttgcttcaggtcaaaagagaagagcaaaatc 19979871  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 43234913 - 43234869
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||||||||||||||||||||  || ||||||||||||    
T  43234913 gcaaaatcctgaattttaggatttaagttgggattttgacaacaa 43234869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 24106686 - 24106645
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaa 254  Q
    |||||||||||||||||| ||||||| ||||| |||||||||    
T  24106686 gcaaaatcctgaattttatgatttaaatcaggattttgacaa 24106645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 18051614 - 18051658
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||  ||||||||||||||||| || ||||||||||||    
T  18051614 gcaaaatcctatattttaggatttaagtcgggattttgacaacaa 18051658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 20923763 - 20923719
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||| ||| ||||||||||||||||| || ||||||||||||    
T  20923763 gcaaaattctggattttaggatttaagtcgggattttgacaacaa 20923719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 22645803 - 22645847
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||| ||| ||||||||||||||||| || ||||||||||||    
T  22645803 gcaaaatactggattttaggatttaagtcgggattttgacaacaa 22645847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 15266126 - 15266083
Alignment:
Q  214 caaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||    
T  15266126 caaaatcctgaattttaggatttaaatcatgattttgacaacaa 15266083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 1690509 - 1690562
Alignment:
Q  168 caagcttgtcaaaatcaggatttt-gcttctggtcgaaagagaagagcaaaatc 220  Q
    |||| ||||||||||| ||||||| ||||| ||| |||||||||||||||||||    
T  1690509 caaggttgtcaaaatcgggatttttgcttcaggttgaaagagaagagcaaaatc 1690562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 31238061 - 31238105
Alignment:
Q  213 gcaaaatcctgaattttaggatttaagtcaggtttttgacaacaa 257  Q
    ||||||||||  ||||||||||||||||| || ||||||||||||    
T  31238061 gcaaaatcctagattttaggatttaagtcgggattttgacaacaa 31238105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 1015 - 974
Alignment:
Q  178 aaaatcaggattttgcttctggtcgaaagagaagagcaaaat 219  Q
    ||||||||||||||||||| |||| |||| ||||||||||||    
T  1015 aaaatcaggattttgcttcaggtcaaaagggaagagcaaaat 974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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