View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17293_high_13 (Length: 236)
Name: NF17293_high_13
Description: NF17293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17293_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8926137 - 8926357
Alignment:
| Q |
1 |
tttttcctacaacaacattactttctttaattgctcttcagttggagtacaccatctgaaaagctgggaccaaagaaaccctggtgtacaagacatgctg |
100 |
Q |
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| T |
8926137 |
tttttcctacaacaacattactttctttaattgctcttcagttggagtacaccatctgaaaagctgggaccaaagaaaccctgatgttcaagacatgctg |
8926236 |
T |
|
| Q |
101 |
tcttgtccgatttatgctaccgattctactgaaagtgtcgtcgaattggacttattaagctgcacaagaatgttcaataaagttttgccagtaacagcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926237 |
tcttgtccgatttatgctaccgattctactgaaagtgtcgtcgaattggacttattaagctgcacaagaatgttcaataaagttttgccagtaacagcaa |
8926336 |
T |
|
| Q |
201 |
gttattatataaggtataatg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
8926337 |
gttattatataaggtataatg |
8926357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 8938572 - 8938778
Alignment:
| Q |
13 |
caacattactttctttaattgctcttcagttggagtacaccatctgaaaagctgggaccaaagaaaccctggtgtacaagacatgctgtcttgtccgatt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8938572 |
caacattactttctttaattgctcttcagttggagtacaccatctgaaaagctgggaccaaagaaaccctggtgtgcaagacatgctgtcttgtccgatt |
8938671 |
T |
|
| Q |
113 |
tatgctaccgattctactgaaagtgtcgtcgaattggacttattaagctgcacaagaatgttcaataaagttttgccagtaacagcaagttattatataa |
212 |
Q |
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| T |
8938672 |
tatgctaccgattctaccgatagtgccgtcgaattggacttattaagctgcacaagaatgtttgataaagttttgccagcatcagcacgttttgatataa |
8938771 |
T |
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| Q |
213 |
ggtataa |
219 |
Q |
| |
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|||||| |
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| T |
8938772 |
tgtataa |
8938778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 190
Target Start/End: Original strand, 8961527 - 8961704
Alignment:
| Q |
10 |
caacaacattactttctttaattgctcttcagttggagtacaccatctgaaaagctgggaccaaagaaaccctggtgtacaagacatgctgtcttgtccg |
109 |
Q |
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||||||| ||||||||||||||||||||||||||||| || ||||| | ||||||||| |||| ||| || |||| ||||||||| | |||||||| |
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| T |
8961527 |
caacaacgttactttctttaattgctcttcagttgga---caacatctcagaagctgggaacaaacaaaacccggtgcccaagacatgttatcttgtcca |
8961623 |
T |
|
| Q |
110 |
atttatgctaccgattctactgaaagtgtcgtcgaattggacttattaagctgcacaagaatgttcaataaagttttgcca |
190 |
Q |
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||||||| | | |||| ||||||||||| ||||||||||||||||| | ||||| |||||||| |||||||||||||| |
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| T |
8961624 |
atttatgttgctgatttatctgaaagtgtcatcgaattggacttattacgttgcaccagaatgtttgataaagttttgcca |
8961704 |
T |
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