View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17293_high_3 (Length: 690)
Name: NF17293_high_3
Description: NF17293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17293_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 52154327 - 52154016
Alignment:
| Q |
18 |
acgagattggtgtcttgcaagaaatggtggttgaattggggctggatgaggtaagtattgccacttgtattttcatgtgttttatatctaatttttagta |
117 |
Q |
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| T |
52154327 |
acgagattggtgtcttgcaagaaatggtggttgaattggggctggatgaggtaagtattgccacttgtattttcatgtgttttatatctaatttttagta |
52154228 |
T |
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| Q |
118 |
tatcttgtatgccgatgaattctaattgtgttcgtctgttcctttttagttgttatttttgtagaaattttgtgttcataattacatgttgttttcaaag |
217 |
Q |
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| T |
52154227 |
tatcttgtatgccgttgaattctaattgtgttcgtctgttcctttttagttgttatttttgtagaaattttgtgttcataattacatgttgttttcaaag |
52154128 |
T |
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| Q |
218 |
tttaatggagtaacatttaacttggtatatgcaaaaatcttaaatctttttaaaaagatttgtt-ataggatatgatgcataaatctcctcgtcaattag |
316 |
Q |
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| T |
52154127 |
tttaatggagtaacatttaacttggtatatgcaaaaatcttaaatctttttaaaaagatttgttaatcggatatgatacataaatctcctcgtcaattag |
52154028 |
T |
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| Q |
317 |
actattaggggg |
328 |
Q |
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| T |
52154027 |
actattaggggg |
52154016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 360 - 679
Target Start/End: Complemental strand, 52154020 - 52153701
Alignment:
| Q |
360 |
ggggaaatatggggagaatattggaagcttggtggattggggtagtgtctcttggcctaattacgcttagacatggtgaaaggacttagactcgttggaa |
459 |
Q |
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| T |
52154020 |
gggggaatatggggagaatattggaagcttggtggattggggtagtgtctcttggcctaattacgcttagacatggtgaaaggacttagactcgttggaa |
52153921 |
T |
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| Q |
460 |
gtggcggtgggctcaaattagttaaaaggggaggtgattaggaaggttggaaatggtcagaggattaaatttatgaaggactgttgggttggaaagaccc |
559 |
Q |
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| T |
52153920 |
gtggcggtgggctcaaattagttaaaaggggaggtgattaggaaggttggaaatagtcagaggattaaattttggaaggactgttgggttggaaagaccc |
52153821 |
T |
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| Q |
560 |
cactttgtgatcaatgtcctcatcttttctttcatttctgatcaaaagatatataagtgtcagatattaggagggtgggaggtctaggcgagaggtgaat |
659 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
52153820 |
cactttgtgattaatgtcctcatcttttctttcatttctgatcaaaagatataaaagtgtcagatattaggagggtgggaggtctagactagaggtgaat |
52153721 |
T |
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| Q |
660 |
tggttgttctcttggtggtg |
679 |
Q |
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| T |
52153720 |
tggttgttctcttggtggtg |
52153701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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