View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17293_high_4 (Length: 545)
Name: NF17293_high_4
Description: NF17293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17293_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 10 - 530
Target Start/End: Complemental strand, 27832243 - 27831725
Alignment:
| Q |
10 |
aagaatatcaaaatataaaccatatatataccattagaaaataaatctttatgtaaatgttttgcattcattgcatacaaaacagcaagacaacacagaa |
109 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
27832243 |
aagaaaatcaaaatataaaccatatatataccattagaaaataaatcttcatgtaaattttttgcattcat-----acaaaacagcaagacaacacagaa |
27832149 |
T |
|
| Q |
110 |
aatcttaatggagaaaatcttaaa---gtataatcttaatggnnnnnnnnnnnnnnnnnnnnnctaatcaatcttggcaatagtgttttcaaacatactt |
206 |
Q |
| |
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|||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27832148 |
aatcttaatggagaaattgttaaaaaagtataatcttaatggaaaaagaaaaaagaaaaaaaactaatcaatcttggcaatagtgttttcaaacatactt |
27832049 |
T |
|
| Q |
207 |
tcgagctccttcaaatgatcctgacgaacgtctagttcatgctggtgattctcgtcaagcagatttttggcaattgaaattgcagcattgatcttcgttt |
306 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27832048 |
tcgagctccttcaaatgatcctgaagaacgtctagttcatgctggtgattctcgtcaagcagatttttggcaattgtaattgcagcattgatcttcgttt |
27831949 |
T |
|
| Q |
307 |
tctctagtgtggagagtttcaactgaatattctgcttcttcaaagcagtttcaattttgtaaacacagagatctaatgcatttttcagttgagccattcg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27831948 |
tctctagtgtggagagtttcaactgaatattctgcttcttcaaagcagtttcaattttgtaaacacagagatctaatgcatttttcagttgagccattcg |
27831849 |
T |
|
| Q |
407 |
taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttgatagtctttctttgtaattggttattattatc |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27831848 |
taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttgatagtctttctttgtaattggttattattatc |
27831749 |
T |
|
| Q |
507 |
ttatttgtattgccggtggaaact |
530 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
27831748 |
ttatttgtattgccggtggaaact |
27831725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 194 - 526
Target Start/End: Complemental strand, 27849340 - 27849008
Alignment:
| Q |
194 |
ttcaaacatactttcgagctccttcaaatgatcctgacgaacgtctagttcatgctggtgattctcgtcaagcagatttttggcaattgaaattgcagca |
293 |
Q |
| |
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||||||||||||||| || |||| ||||||||||| | |||| |||| |||||| ||| |||||| ||||||| |||||| || ||| ||||||| || |
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| T |
27849340 |
ttcaaacatactttcaagatcctccaaatgatcctcaagaacatctacttcatgaaggtcattctcatcaagcaaattttttgccattctaattgcaaca |
27849241 |
T |
|
| Q |
294 |
ttgatcttcgttttctctagtgtggagagtttcaactgaatattctgcttcttcaaagcagtttcaattttgtaaacacagagatctaatgcatttttca |
393 |
Q |
| |
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|| |||||| | |||||| |||||||||| ||||| | | |||||||||||| ||||||||||| ||||| |||| ||| ||| ||||||||||||| |
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| T |
27849240 |
ttcatcttcctgttctcttgtgtggagagcttcaagttagcattctgcttctttaaagcagtttcgattttataaatgcagctatccaatgcatttttca |
27849141 |
T |
|
| Q |
394 |
gttgagccattcgtaggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttgatagtctttctttgtaatt |
493 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||| || |||||||||| ||||| || |||||||||||||||||||| |||||||||||||| |
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| T |
27849140 |
gttgagccatttgtaggaatttctcatcttcatcacggtggttctcagcttcttgaatcaactttttaatttcttctgttgatagcctttctttgtaatt |
27849041 |
T |
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| Q |
494 |
ggttattattatcttatttgtattgccggtgga |
526 |
Q |
| |
|
|| ||||| |||| ||||||| |||| ||||| |
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|
| T |
27849040 |
agtaattataatctcatttgtactgccagtgga |
27849008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 407 - 520
Target Start/End: Original strand, 8615910 - 8616023
Alignment:
| Q |
407 |
taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttgatagtctttctttgtaattggttattattatc |
506 |
Q |
| |
|
||||||||| ||||||||||| ||||| | || ||||||| ||||| ||| |||||||| || | |||| |||||||||| ||||||||| |||| |
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| T |
8615910 |
taggaatttttcatcttcagcgcggtactcctctgcttcttgaatcagttttttaatttcatcagccgataacctttctttgtcattggttatcgttatt |
8616009 |
T |
|
| Q |
507 |
ttatttgtattgcc |
520 |
Q |
| |
|
| |||||||||||| |
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|
| T |
8616010 |
tcatttgtattgcc |
8616023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 526
Target Start/End: Complemental strand, 8674552 - 8674464
Alignment:
| Q |
438 |
tcagcttcttcaatcattttcttaatttcttctgttgatagtctttctttgtaattggttattattatcttatttgtattgccggtgga |
526 |
Q |
| |
|
|||||||||| ||||| ||| |||||||||||| |||| | |||||||||| || |||||| |||||| || ||||| |||||||| |
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| T |
8674552 |
tcagcttcttgaatcaatttgttaatttcttctattgacaacctttctttgttgtttgttattgttatctcgttggtatttccggtgga |
8674464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 407 - 526
Target Start/End: Original strand, 15594233 - 15594352
Alignment:
| Q |
407 |
taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttgatagtctttctttgtaattggttattattatc |
506 |
Q |
| |
|
|||||||||||||||||||||||| || | || ||||||| ||||||||| |||||||| | || ||| | |||||||||| |||||||||| | ||| |
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| T |
15594233 |
taggaatttctcatcttcagcacgatattcctcggcttcttgaatcatttttttaatttcatatgctgacaacctttctttgtcattggttattgtgatc |
15594332 |
T |
|
| Q |
507 |
ttatttgtattgccggtgga |
526 |
Q |
| |
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| ||||||||||| ||||| |
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| T |
15594333 |
tcgtttgtattgccagtgga |
15594352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 407 - 499
Target Start/End: Original strand, 30774447 - 30774539
Alignment:
| Q |
407 |
taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttgatagtctttctttgtaattggttat |
499 |
Q |
| |
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||||||||||||||||||||||||||| | |||||||| ||||||||| |||||||||||| | |||| |||||||||| |||||||| |
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| T |
30774447 |
taggaatttctcatcttcagcacggtactctctagcttcttgaatcattttgttaatttcttctctggataacctttctttgtcgttggttat |
30774539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 499
Target Start/End: Complemental strand, 16662968 - 16662876
Alignment:
| Q |
407 |
taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttgatagtctttctttgtaattggttat |
499 |
Q |
| |
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|||||||||||||||||||||| |||| | | |||||||| ||||| ||| | |||||| || | |||| |||||||||| ||||||||| |
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| T |
16662968 |
taggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggttat |
16662876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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