View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17293_high_8 (Length: 441)
Name: NF17293_high_8
Description: NF17293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17293_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 52 - 433
Target Start/End: Original strand, 3724638 - 3725018
Alignment:
| Q |
52 |
tttgccctaacattgcatcttttatatagccaacattttattcattcataggtgatgacttacattctagttaaatacaaaacctgaatacaagtagatt |
151 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3724638 |
tttgccctaacattgcatcttttatatatccaacattttatccattcataggtgatgacttacattctagttaaatacaaaacctgaatacaagtagatt |
3724737 |
T |
|
| Q |
152 |
ttacactagtagtcgggtgtgtatgttagtaggtgtgacaaactaatnnnnnnnnnnnnnnnnnngtgtagaaatatacatcaaatatattcctgttttc |
251 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
3724738 |
ttacactagtagtcgtgtgtgtatgttagtaggtgtgacaaactaataaaaaagaaacaaaaaa-gtgtagaactatacatcaaatatattcctgttttc |
3724836 |
T |
|
| Q |
252 |
ttacacctcattggaacaaaacttttaagattgttagatatttgaggaggagctaaatagaagtctatcatgggatgggagagaaatgcatagaaaaaat |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3724837 |
ttacacctcattggaacaaaacttttaagattgttggatatttgaggaggagctaaataaaagtctatcatgggatgggagagaaatgcatagcaaaaat |
3724936 |
T |
|
| Q |
352 |
aagacatgagttgaaatttgactaatacacttactagattaagattacaaccatctgagtttaattttattgggttcatctc |
433 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3724937 |
acgacatgagttaaaatttgactaatacacttactagattaagattacaaccatctgagtttaattttattggtttcatctc |
3725018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 3724589 - 3724618
Alignment:
| Q |
1 |
tataaaaaacacgcttaacttgccctaaca |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3724589 |
tataaaaaacacgcttaacttgccctaaca |
3724618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University