View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17293_low_1 (Length: 984)
Name: NF17293_low_1
Description: NF17293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17293_low_1 |
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| [»] scaffold0223 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 925; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 925; E-Value: 0
Query Start/End: Original strand, 15 - 969
Target Start/End: Complemental strand, 45504786 - 45503833
Alignment:
| Q |
15 |
cagagacatacatgcaaaactctcatcttcgaaactagaaccatagatactaactccaccggttccctgcagccaatggaaacacattttgagtgagaag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45504786 |
cagagacatacatgcaaaactctcatcttcgaaactagaaccatagatactaactccaccggttccctgcagccaatggaaacacattttgagtgagaag |
45504687 |
T |
|
| Q |
115 |
aaacataattaccttcattgaaacaaatacatggcaagtggaagtaaatgttcacattaacatataaacaaatataacaaaggctattcgcatatacaag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45504686 |
aaacataattaccttcattgaaacaaatacatggcaagtggaagtaaatgttcacattaacatataaacaaatataacaaaggctattcgcatatacaag |
45504587 |
T |
|
| Q |
215 |
caaacaaacacatgcaacaaatctcacatttccctcggtgaagtcccctccctgaatcatgaattctttgattatacgatggaaggagcatcctttgtaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45504586 |
caaacaaacacatgcaacaaatctcacatttccctcggtgaagtcccctccctgaatcatgaattctttgattatacgatggaaggagcatcctttgtaa |
45504487 |
T |
|
| Q |
315 |
ccatatcctttatctcctgcaaaaagattattgaagccaaactttaaaatgctatgttacacaatttattcnnnnnnngtaaaccaagtacaaggacaaa |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45504486 |
ccatatcctttatctcctgcaaaaagattattgaagccaaactttaaaatgctatgttacacaatttattcaaaaaa-gtaaaccaagtacaaggacaaa |
45504388 |
T |
|
| Q |
415 |
ggtgcagaaaaatatggttgcttgcctgtgcacaaagcacggaaattttcaactgttttaggagcaacctctccaaacaagcccaaaacaattctgccca |
514 |
Q |
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| T |
45504387 |
ggtgcagaaaaatatggttgcttgcctgtgcacaaagcacggaaattttcaactgttttaggagcaacctctccaaacaagcccaaaacaattctgccca |
45504288 |
T |
|
| Q |
515 |
aagattcacccccagcttctacgtcaaagaaacatttggtagtaactttggcttgcagctcttgaaccttataacagtaataaaaccatgtaagataata |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45504287 |
aagattcacccccagcttctacgtcaaagaaacatttggtagtaactttggcttgcagctcttgaaccttataacagtaataaaaccatgtaagataata |
45504188 |
T |
|
| Q |
615 |
aacgtccaacatcttaatcacaacacagtcaactattgaacaatgccagcgatttttgtgattaacaaatagtcaataggattataaacgcgtaaacaat |
714 |
Q |
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| T |
45504187 |
aacgtccaacatcttaatcacaacacagtcaactattgaacaatgccagcgatttttgtgattaacaaatagtcaatacgattataaacgcgtaaacaat |
45504088 |
T |
|
| Q |
715 |
acaaacatttaatgaaatcaaacaacaaacaagcagtctaaatataaaaaatcatttgagataggtttagtttaagaaaacattttcaactcgttttctg |
814 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45504087 |
acaaacatttaatgaaatcaaacaacaaacaagcagtctaaatataaaaaatcatttgagataggtttagtttaagaaaacattttcaactcgttttctg |
45503988 |
T |
|
| Q |
815 |
ttttccttataaattacagaagtaacattttataagactataagtattctcgagtaaaaagtcatgttgataccaaatgtgtgaggcactaaagtagtca |
914 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45503987 |
ttttccttataaattacagaagtaacattttataagactataagtattctcgagtaaaaagtcatgttgataccaaatgtgtgaggcactaaagtagtca |
45503888 |
T |
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| Q |
915 |
tcaaatttatcaaattacaaaaacatccctaaatgtgtcctttgttagtaatttt |
969 |
Q |
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| T |
45503887 |
tcaaatttatcaaattacaaaaacatccctaaatgtgtcctttgttagtaatttt |
45503833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 7e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 237 - 335
Target Start/End: Complemental strand, 38220724 - 38220626
Alignment:
| Q |
237 |
ctcacatttccctcggtgaagtcccctccctgaatcatgaattctttgattatacgatggaaggagcatcctttgtaaccatatcctttatctcctgca |
335 |
Q |
| |
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||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||| | | ||||||||||||||||||| ||||||||| |
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| T |
38220724 |
ctcacatttccttctgtgaagtcccctccctgaatcatgaaatctttgattatgcgatggaaggtggaatctttgtaaccatatcctttctctcctgca |
38220626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 420 - 572
Target Start/End: Complemental strand, 38220532 - 38220380
Alignment:
| Q |
420 |
agaaaaatatggttgcttgcctgtgcacaaagcacggaaattttcaactgttttaggagcaacctctccaaacaagcccaaaacaattctgcccaaagat |
519 |
Q |
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|||||||| || |||||| |||||||||||||| |||||||||||||||||||| ||| |||| |||||||| | ||| | |||||| || || |||| |
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| T |
38220532 |
agaaaaatttgattgcttacctgtgcacaaagctcggaaattttcaactgttttgggaacaacatctccaaataggccaataacaatccttccagcagat |
38220433 |
T |
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| Q |
520 |
tcacccccagcttctacgtcaaagaaacatttggtagtaactttggcttgcag |
572 |
Q |
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||||| ||| | |||| ||||||||| ||| | || |||||||||||||| |
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| T |
38220432 |
tcacctccaattactacatcaaagaaaaccttgcttgttactttggcttgcag |
38220380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 38220884 - 38220813
Alignment:
| Q |
20 |
acatacatgcaaaactctcatcttcgaaactagaaccatagatactaactccaccggttccctgcagccaat |
91 |
Q |
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||||||| |||||| |||||||||| || || |||||||||||| |||||||| |||||||||| ||||| |
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| T |
38220884 |
acatacaagcaaaattctcatcttcaaatttaccaccatagatactgactccaccagttccctgcatccaat |
38220813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 926 - 969
Target Start/End: Original strand, 10107 - 10150
Alignment:
| Q |
926 |
aaattacaaaaacatccctaaatgtgtcctttgttagtaatttt |
969 |
Q |
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| T |
10107 |
aaattacaaaaccatacctaaatgtgtcctttgttagtcatttt |
10150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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